Cover bacteria/archaeota taxonomy

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# Aigarchaeota

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# Archaea
- Different from [[bacteria]] in the generation of the cell membrane
- All prokaryotic
- More closely related to [[eukarya]] than [[bacteria]]
- Newer findings imply that [[Lokiarchaeota]] are closer than the
[[TACK Supergroup]] to [[eukarya]]
- Vast majority are non-extremophile
## Taxonomy
- [[Archaea]]
- [[Euryarchaeota]]
- [[Proteoarchaeota]]
- [[TACK Supergroup]]
- [[Korarchaeota]]
- TC MRCA
- [[Thaumarchaeota]]
- [[Crenarchaeota]]
- [[Lokiarchaeota]]
- Loki1/Loki2
- Loki3/[[Eukarya]]
[//begin]: # "Autogenerated link references for markdown compatibility"
[bacteria]: bacteria "Bacteria"
[Lokiarchaeota]: lokiarchaeota "Lokiarchaeota"
[TACK Supergroup]: tack-supergroup "TACK Supergroup"
[Archaea]: archaea "Archaea"
[Euryarchaeota]: euryarchaeota "Euryarchaeota"
[Korarchaeota]: korarchaeota "Korarchaeota"
[Thaumarchaeota]: thaumarchaeota "Thaumarchaeota"
[Crenarchaeota]: crenarchaeota "Crenarchaeota"
[//end]: # "Autogenerated link references"

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# Bacteria
- Bacterial flagellum
- Most commonly, one flagellum creates a "run and twiddle" movement where
bacteria can achieve [[chemotaxis]]
- [[Spirochaeota]] have their flagellum throughout the inside of the cell,
which allows movement through viscous materials
- By default, bacteria are Gram-negative, except for [[Fermicutes]]:
Gram-negative bacteria form a [[symplesiomorphy]]
## Taxonomy
- [[Bacteria]]
- [[Terrabacteria]]
- [[Cyanobacteria]]
- [[Fermicutes]] (Gram-positive bacteria)
- [[Hydrobacteria]]
- [[Spirochaeota]]
- Proteo-Plancto MRCA
- [[Proteobacteria]]
- [[Planctobacteria]]
- [[Chlamydiae]]
[//begin]: # "Autogenerated link references for markdown compatibility"
[chemotaxis]: chemotaxis "Chemotaxis"
[Spirochaeota]: spirochaeota "Spirochaeota"
[Fermicutes]: fermicutes "Fermicutes"
[Bacteria]: bacteria "Bacteria"
[Cyanobacteria]: cyanobacteria "Cyanobacteria"
[Proteobacteria]: proteobacteria "Proteobacteria"
[Chlamydiae]: chlamydiae "Chlamydiae"
[//end]: # "Autogenerated link references"

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# Chemotaxis

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# Chlamydiae
- No cell wall
- No ATP synthesis
- Extremely small

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# Crenarchaeota
- Extreme Thermo-acido-philes: Prefer hot and/or acidic habitats
- Large cells, similar to eukaryotic amoebas

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# Cyanobacteria
- Responsible for The Great Oxygenation
- [[Spirulina]]: Highly nutritious
- [[Rivularia]]: Classifies as multi-cellular, as it can regrow its
photosynthetic filament

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# Euryarchaeota
- [[Methanogens]]: Pick up waste molecules in anaerobic locations, such as H₂,
CH₃CO₂H, HCO₂H, CH₄0
- Extreme Halophiles: Prefer extremely salty habitats

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# Fermicutes
- Gram-positive: Lack an outer membrane, instead having a thick peptidoglycan
cell wall
- Include lactic acid bacteria

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# Korarchaeota

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# Lokiarchaeota
- Proposed as a phylum in 2015
- Closer than the [[TACK Supergroup]] to [[eukarya]]

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# Proteobacteria
- Incredibly diverse in shape, physiology, and ecology
## Taxonomy
- [[Proteobacteria]]
- [[Acidobacteria]]
- αβγδεζ
- Deltaproteobacteria
- αβγεζ
- Epsilonproteobacteria
- αβγζ
- Mitochondrial Ancestor
- [[Alphaproteobacteria]]
- [[Mitochondrion]]
- βγζ
- Zetaproteobacteria
- βγ
- Betaproteobacteria
- Gammaproteobacteria
[//begin]: # "Autogenerated link references for markdown compatibility"
[Proteobacteria]: proteobacteria "Proteobacteria"
[//end]: # "Autogenerated link references"

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# Spirochaeota
- Free-living and parasitic
- Includes agents of [[syphilis]] and [[Lyme disease]]
- Periplasmic flagella, where the flagellum runs through the inside of the
cell, allowing for movement through viscous materials

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# TACK Supergroup
- [[Thaumarchaeota]]
- [[Aigarchaeota]]
- [[Crenarchaeota]]
- [[Korarchaeota]]
[//begin]: # "Autogenerated link references for markdown compatibility"
[Thaumarchaeota]: thaumarchaeota "Thaumarchaeota"
[Aigarchaeota]: aigarchaeota "Aigarchaeota"
[Crenarchaeota]: crenarchaeota "Crenarchaeota"
[Korarchaeota]: korarchaeota "Korarchaeota"
[//end]: # "Autogenerated link references"

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# Thaumarchaeota