diff --git a/aigarchaeota.md b/aigarchaeota.md new file mode 100644 index 0000000..800d73c --- /dev/null +++ b/aigarchaeota.md @@ -0,0 +1,2 @@ +# Aigarchaeota + diff --git a/archaea.md b/archaea.md new file mode 100644 index 0000000..2e3fc3b --- /dev/null +++ b/archaea.md @@ -0,0 +1,33 @@ +# Archaea + +- Different from [[bacteria]] in the generation of the cell membrane +- All prokaryotic +- More closely related to [[eukarya]] than [[bacteria]] +- Newer findings imply that [[Lokiarchaeota]] are closer than the +[[TACK Supergroup]] to [[eukarya]] +- Vast majority are non-extremophile + +## Taxonomy + +- [[Archaea]] + - [[Euryarchaeota]] + - [[Proteoarchaeota]] + - [[TACK Supergroup]] + - [[Korarchaeota]] + - TC MRCA + - [[Thaumarchaeota]] + - [[Crenarchaeota]] + - [[Lokiarchaeota]] + - Loki1/Loki2 + - Loki3/[[Eukarya]] + +[//begin]: # "Autogenerated link references for markdown compatibility" +[bacteria]: bacteria "Bacteria" +[Lokiarchaeota]: lokiarchaeota "Lokiarchaeota" +[TACK Supergroup]: tack-supergroup "TACK Supergroup" +[Archaea]: archaea "Archaea" +[Euryarchaeota]: euryarchaeota "Euryarchaeota" +[Korarchaeota]: korarchaeota "Korarchaeota" +[Thaumarchaeota]: thaumarchaeota "Thaumarchaeota" +[Crenarchaeota]: crenarchaeota "Crenarchaeota" +[//end]: # "Autogenerated link references" diff --git a/bacteria.md b/bacteria.md new file mode 100644 index 0000000..9b10027 --- /dev/null +++ b/bacteria.md @@ -0,0 +1,32 @@ +# Bacteria + +- Bacterial flagellum + - Most commonly, one flagellum creates a "run and twiddle" movement where + bacteria can achieve [[chemotaxis]] + - [[Spirochaeota]] have their flagellum throughout the inside of the cell, + which allows movement through viscous materials +- By default, bacteria are Gram-negative, except for [[Fermicutes]]: +Gram-negative bacteria form a [[symplesiomorphy]] + +## Taxonomy + +- [[Bacteria]] + - [[Terrabacteria]] + - [[Cyanobacteria]] + - [[Fermicutes]] (Gram-positive bacteria) + - [[Hydrobacteria]] + - [[Spirochaeota]] + - Proteo-Plancto MRCA + - [[Proteobacteria]] + - [[Planctobacteria]] + - [[Chlamydiae]] + +[//begin]: # "Autogenerated link references for markdown compatibility" +[chemotaxis]: chemotaxis "Chemotaxis" +[Spirochaeota]: spirochaeota "Spirochaeota" +[Fermicutes]: fermicutes "Fermicutes" +[Bacteria]: bacteria "Bacteria" +[Cyanobacteria]: cyanobacteria "Cyanobacteria" +[Proteobacteria]: proteobacteria "Proteobacteria" +[Chlamydiae]: chlamydiae "Chlamydiae" +[//end]: # "Autogenerated link references" diff --git a/chemotaxis.md b/chemotaxis.md new file mode 100644 index 0000000..3d4e3f5 --- /dev/null +++ b/chemotaxis.md @@ -0,0 +1,2 @@ +# Chemotaxis + diff --git a/chlamydiae.md b/chlamydiae.md new file mode 100644 index 0000000..2ab11b4 --- /dev/null +++ b/chlamydiae.md @@ -0,0 +1,5 @@ +# Chlamydiae + +- No cell wall +- No ATP synthesis +- Extremely small diff --git a/crenarchaeota.md b/crenarchaeota.md new file mode 100644 index 0000000..711b8d1 --- /dev/null +++ b/crenarchaeota.md @@ -0,0 +1,4 @@ +# Crenarchaeota + +- Extreme Thermo-acido-philes: Prefer hot and/or acidic habitats +- Large cells, similar to eukaryotic amoebas diff --git a/cyanobacteria.md b/cyanobacteria.md new file mode 100644 index 0000000..bedca38 --- /dev/null +++ b/cyanobacteria.md @@ -0,0 +1,6 @@ +# Cyanobacteria + +- Responsible for The Great Oxygenation +- [[Spirulina]]: Highly nutritious +- [[Rivularia]]: Classifies as multi-cellular, as it can regrow its +photosynthetic filament diff --git a/euryarchaeota.md b/euryarchaeota.md new file mode 100644 index 0000000..67893b2 --- /dev/null +++ b/euryarchaeota.md @@ -0,0 +1,5 @@ +# Euryarchaeota + +- [[Methanogens]]: Pick up waste molecules in anaerobic locations, such as H₂, +CH₃CO₂H, HCO₂H, CH₄0 +- Extreme Halophiles: Prefer extremely salty habitats diff --git a/fermicutes.md b/fermicutes.md new file mode 100644 index 0000000..93bbe0d --- /dev/null +++ b/fermicutes.md @@ -0,0 +1,5 @@ +# Fermicutes + +- Gram-positive: Lack an outer membrane, instead having a thick peptidoglycan +cell wall +- Include lactic acid bacteria diff --git a/korarchaeota.md b/korarchaeota.md new file mode 100644 index 0000000..f128eca --- /dev/null +++ b/korarchaeota.md @@ -0,0 +1,2 @@ +# Korarchaeota + diff --git a/lokiarchaeota.md b/lokiarchaeota.md new file mode 100644 index 0000000..cebd34d --- /dev/null +++ b/lokiarchaeota.md @@ -0,0 +1,4 @@ +# Lokiarchaeota + +- Proposed as a phylum in 2015 +- Closer than the [[TACK Supergroup]] to [[eukarya]] diff --git a/proteobacteria.md b/proteobacteria.md new file mode 100644 index 0000000..6556e8c --- /dev/null +++ b/proteobacteria.md @@ -0,0 +1,25 @@ +# Proteobacteria + +- Incredibly diverse in shape, physiology, and ecology + +## Taxonomy + +- [[Proteobacteria]] + - [[Acidobacteria]] + - αβγδεζ + - Deltaproteobacteria + - αβγεζ + - Epsilonproteobacteria + - αβγζ + - Mitochondrial Ancestor + - [[Alphaproteobacteria]] + - [[Mitochondrion]] + - βγζ + - Zetaproteobacteria + - βγ + - Betaproteobacteria + - Gammaproteobacteria + +[//begin]: # "Autogenerated link references for markdown compatibility" +[Proteobacteria]: proteobacteria "Proteobacteria" +[//end]: # "Autogenerated link references" diff --git a/spirochaeota.md b/spirochaeota.md new file mode 100644 index 0000000..f5ae958 --- /dev/null +++ b/spirochaeota.md @@ -0,0 +1,6 @@ +# Spirochaeota + +- Free-living and parasitic +- Includes agents of [[syphilis]] and [[Lyme disease]] +- Periplasmic flagella, where the flagellum runs through the inside of the +cell, allowing for movement through viscous materials diff --git a/tack-supergroup.md b/tack-supergroup.md new file mode 100644 index 0000000..76a48d5 --- /dev/null +++ b/tack-supergroup.md @@ -0,0 +1,13 @@ +# TACK Supergroup + +- [[Thaumarchaeota]] +- [[Aigarchaeota]] +- [[Crenarchaeota]] +- [[Korarchaeota]] + +[//begin]: # "Autogenerated link references for markdown compatibility" +[Thaumarchaeota]: thaumarchaeota "Thaumarchaeota" +[Aigarchaeota]: aigarchaeota "Aigarchaeota" +[Crenarchaeota]: crenarchaeota "Crenarchaeota" +[Korarchaeota]: korarchaeota "Korarchaeota" +[//end]: # "Autogenerated link references" diff --git a/thaumarchaeota.md b/thaumarchaeota.md new file mode 100644 index 0000000..8fb6589 --- /dev/null +++ b/thaumarchaeota.md @@ -0,0 +1,2 @@ +# Thaumarchaeota +