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rana-cli/wakatime/packages/pygments/lexers/math.py

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# -*- coding: utf-8 -*-
"""
pygments.lexers.math
~~~~~~~~~~~~~~~~~~~~
Lexers for math languages.
:copyright: Copyright 2006-2013 by the Pygments team, see AUTHORS.
:license: BSD, see LICENSE for details.
"""
import re
from pygments.util import shebang_matches
from pygments.lexer import Lexer, RegexLexer, bygroups, include, \
combined, do_insertions
from pygments.token import Comment, String, Punctuation, Keyword, Name, \
Operator, Number, Text, Generic
from pygments.lexers.agile import PythonLexer
from pygments.lexers import _scilab_builtins
from pygments.lexers import _stan_builtins
__all__ = ['JuliaLexer', 'JuliaConsoleLexer', 'MuPADLexer', 'MatlabLexer',
'MatlabSessionLexer', 'OctaveLexer', 'ScilabLexer', 'NumPyLexer',
'RConsoleLexer', 'SLexer', 'JagsLexer', 'BugsLexer', 'StanLexer',
'IDLLexer', 'RdLexer', 'IgorLexer']
class JuliaLexer(RegexLexer):
"""
For `Julia <http://julialang.org/>`_ source code.
*New in Pygments 1.6.*
"""
name = 'Julia'
aliases = ['julia','jl']
filenames = ['*.jl']
mimetypes = ['text/x-julia','application/x-julia']
builtins = [
'exit','whos','edit','load','is','isa','isequal','typeof','tuple',
'ntuple','uid','hash','finalizer','convert','promote','subtype',
'typemin','typemax','realmin','realmax','sizeof','eps','promote_type',
'method_exists','applicable','invoke','dlopen','dlsym','system',
'error','throw','assert','new','Inf','Nan','pi','im',
]
tokens = {
'root': [
(r'\n', Text),
(r'[^\S\n]+', Text),
(r'#.*$', Comment),
(r'[]{}:(),;[@]', Punctuation),
(r'\\\n', Text),
(r'\\', Text),
# keywords
(r'(begin|while|for|in|return|break|continue|'
r'macro|quote|let|if|elseif|else|try|catch|end|'
r'bitstype|ccall|do|using|module|import|export|'
r'importall|baremodule|immutable)\b', Keyword),
(r'(local|global|const)\b', Keyword.Declaration),
(r'(Bool|Int|Int8|Int16|Int32|Int64|Uint|Uint8|Uint16|Uint32|Uint64'
r'|Float32|Float64|Complex64|Complex128|Any|Nothing|None)\b',
Keyword.Type),
# functions
(r'(function)((?:\s|\\\s)+)',
bygroups(Keyword,Name.Function), 'funcname'),
# types
(r'(type|typealias|abstract)((?:\s|\\\s)+)',
bygroups(Keyword,Name.Class), 'typename'),
# operators
(r'==|!=|<=|>=|->|&&|\|\||::|<:|[-~+/*%=<>&^|.?!$]', Operator),
(r'\.\*|\.\^|\.\\|\.\/|\\', Operator),
# builtins
('(' + '|'.join(builtins) + r')\b', Name.Builtin),
# backticks
(r'`(?s).*?`', String.Backtick),
# chars
(r"'(\\.|\\[0-7]{1,3}|\\x[a-fA-F0-9]{1,3}|\\u[a-fA-F0-9]{1,4}|"
r"\\U[a-fA-F0-9]{1,6}|[^\\\'\n])'", String.Char),
# try to match trailing transpose
(r'(?<=[.\w\)\]])\'+', Operator),
# strings
(r'(?:[IL])"', String, 'string'),
(r'[E]?"', String, combined('stringescape', 'string')),
# names
(r'@[a-zA-Z0-9_.]+', Name.Decorator),
(r'[a-zA-Z_][a-zA-Z0-9_]*', Name),
# numbers
(r'(\d+(_\d+)+\.\d*|\d*\.\d+(_\d+)+)([eEf][+-]?[0-9]+)?', Number.Float),
(r'(\d+\.\d*|\d*\.\d+)([eEf][+-]?[0-9]+)?', Number.Float),
(r'\d+(_\d+)+[eEf][+-]?[0-9]+', Number.Float),
(r'\d+[eEf][+-]?[0-9]+', Number.Float),
(r'0b[01]+(_[01]+)+', Number.Binary),
(r'0b[01]+', Number.Binary),
(r'0o[0-7]+(_[0-7]+)+', Number.Oct),
(r'0o[0-7]+', Number.Oct),
(r'0x[a-fA-F0-9]+(_[a-fA-F0-9]+)+', Number.Hex),
(r'0x[a-fA-F0-9]+', Number.Hex),
(r'\d+(_\d+)+', Number.Integer),
(r'\d+', Number.Integer)
],
'funcname': [
('[a-zA-Z_][a-zA-Z0-9_]*', Name.Function, '#pop'),
('\([^\s\w{]{1,2}\)', Operator, '#pop'),
('[^\s\w{]{1,2}', Operator, '#pop'),
],
'typename': [
('[a-zA-Z_][a-zA-Z0-9_]*', Name.Class, '#pop')
],
'stringescape': [
(r'\\([\\abfnrtv"\']|\n|N{.*?}|u[a-fA-F0-9]{4}|'
r'U[a-fA-F0-9]{8}|x[a-fA-F0-9]{2}|[0-7]{1,3})', String.Escape)
],
'string': [
(r'"', String, '#pop'),
(r'\\\\|\\"|\\\n', String.Escape), # included here for raw strings
(r'\$(\([a-zA-Z0-9_]+\))?[-#0 +]*([0-9]+|[*])?(\.([0-9]+|[*]))?',
String.Interpol),
(r'[^\\"$]+', String),
# quotes, dollar signs, and backslashes must be parsed one at a time
(r'["\\]', String),
# unhandled string formatting sign
(r'\$', String)
],
}
def analyse_text(text):
return shebang_matches(text, r'julia')
line_re = re.compile('.*?\n')
class JuliaConsoleLexer(Lexer):
"""
For Julia console sessions. Modeled after MatlabSessionLexer.
*New in Pygments 1.6.*
"""
name = 'Julia console'
aliases = ['jlcon']
def get_tokens_unprocessed(self, text):
jllexer = JuliaLexer(**self.options)
curcode = ''
insertions = []
for match in line_re.finditer(text):
line = match.group()
if line.startswith('julia>'):
insertions.append((len(curcode),
[(0, Generic.Prompt, line[:3])]))
curcode += line[3:]
elif line.startswith(' '):
idx = len(curcode)
# without is showing error on same line as before...?
line = "\n" + line
token = (0, Generic.Traceback, line)
insertions.append((idx, [token]))
else:
if curcode:
for item in do_insertions(
insertions, jllexer.get_tokens_unprocessed(curcode)):
yield item
curcode = ''
insertions = []
yield match.start(), Generic.Output, line
if curcode: # or item:
for item in do_insertions(
insertions, jllexer.get_tokens_unprocessed(curcode)):
yield item
class MuPADLexer(RegexLexer):
"""
A `MuPAD <http://www.mupad.com>`_ lexer.
Contributed by Christopher Creutzig <christopher@creutzig.de>.
*New in Pygments 0.8.*
"""
name = 'MuPAD'
aliases = ['mupad']
filenames = ['*.mu']
tokens = {
'root' : [
(r'//.*?$', Comment.Single),
(r'/\*', Comment.Multiline, 'comment'),
(r'"(?:[^"\\]|\\.)*"', String),
(r'\(|\)|\[|\]|\{|\}', Punctuation),
(r'''(?x)\b(?:
next|break|end|
axiom|end_axiom|category|end_category|domain|end_domain|inherits|
if|%if|then|elif|else|end_if|
case|of|do|otherwise|end_case|
while|end_while|
repeat|until|end_repeat|
for|from|to|downto|step|end_for|
proc|local|option|save|begin|end_proc|
delete|frame
)\b''', Keyword),
(r'''(?x)\b(?:
DOM_ARRAY|DOM_BOOL|DOM_COMPLEX|DOM_DOMAIN|DOM_EXEC|DOM_EXPR|
DOM_FAIL|DOM_FLOAT|DOM_FRAME|DOM_FUNC_ENV|DOM_HFARRAY|DOM_IDENT|
DOM_INT|DOM_INTERVAL|DOM_LIST|DOM_NIL|DOM_NULL|DOM_POLY|DOM_PROC|
DOM_PROC_ENV|DOM_RAT|DOM_SET|DOM_STRING|DOM_TABLE|DOM_VAR
)\b''', Name.Class),
(r'''(?x)\b(?:
PI|EULER|E|CATALAN|
NIL|FAIL|undefined|infinity|
TRUE|FALSE|UNKNOWN
)\b''',
Name.Constant),
(r'\b(?:dom|procname)\b', Name.Builtin.Pseudo),
(r'\.|,|:|;|=|\+|-|\*|/|\^|@|>|<|\$|\||!|\'|%|~=', Operator),
(r'''(?x)\b(?:
and|or|not|xor|
assuming|
div|mod|
union|minus|intersect|in|subset
)\b''',
Operator.Word),
(r'\b(?:I|RDN_INF|RD_NINF|RD_NAN)\b', Number),
#(r'\b(?:adt|linalg|newDomain|hold)\b', Name.Builtin),
(r'''(?x)
((?:[a-zA-Z_#][a-zA-Z_#0-9]*|`[^`]*`)
(?:::[a-zA-Z_#][a-zA-Z_#0-9]*|`[^`]*`)*)(\s*)([(])''',
bygroups(Name.Function, Text, Punctuation)),
(r'''(?x)
(?:[a-zA-Z_#][a-zA-Z_#0-9]*|`[^`]*`)
(?:::[a-zA-Z_#][a-zA-Z_#0-9]*|`[^`]*`)*''', Name.Variable),
(r'[0-9]+(?:\.[0-9]*)?(?:e[0-9]+)?', Number),
(r'\.[0-9]+(?:e[0-9]+)?', Number),
(r'.', Text)
],
'comment' : [
(r'[^*/]', Comment.Multiline),
(r'/\*', Comment.Multiline, '#push'),
(r'\*/', Comment.Multiline, '#pop'),
(r'[*/]', Comment.Multiline)
]
}
class MatlabLexer(RegexLexer):
"""
For Matlab source code.
*New in Pygments 0.10.*
"""
name = 'Matlab'
aliases = ['matlab']
filenames = ['*.m']
mimetypes = ['text/matlab']
#
# These lists are generated automatically.
# Run the following in bash shell:
#
# for f in elfun specfun elmat; do
# echo -n "$f = "
# matlab -nojvm -r "help $f;exit;" | perl -ne \
# 'push(@c,$1) if /^ (\w+)\s+-/; END {print q{["}.join(q{","},@c).qq{"]\n};}'
# done
#
# elfun: Elementary math functions
# specfun: Special Math functions
# elmat: Elementary matrices and matrix manipulation
#
# taken from Matlab version 7.4.0.336 (R2007a)
#
elfun = ["sin","sind","sinh","asin","asind","asinh","cos","cosd","cosh",
"acos","acosd","acosh","tan","tand","tanh","atan","atand","atan2",
"atanh","sec","secd","sech","asec","asecd","asech","csc","cscd",
"csch","acsc","acscd","acsch","cot","cotd","coth","acot","acotd",
"acoth","hypot","exp","expm1","log","log1p","log10","log2","pow2",
"realpow","reallog","realsqrt","sqrt","nthroot","nextpow2","abs",
"angle","complex","conj","imag","real","unwrap","isreal","cplxpair",
"fix","floor","ceil","round","mod","rem","sign"]
specfun = ["airy","besselj","bessely","besselh","besseli","besselk","beta",
"betainc","betaln","ellipj","ellipke","erf","erfc","erfcx",
"erfinv","expint","gamma","gammainc","gammaln","psi","legendre",
"cross","dot","factor","isprime","primes","gcd","lcm","rat",
"rats","perms","nchoosek","factorial","cart2sph","cart2pol",
"pol2cart","sph2cart","hsv2rgb","rgb2hsv"]
elmat = ["zeros","ones","eye","repmat","rand","randn","linspace","logspace",
"freqspace","meshgrid","accumarray","size","length","ndims","numel",
"disp","isempty","isequal","isequalwithequalnans","cat","reshape",
"diag","blkdiag","tril","triu","fliplr","flipud","flipdim","rot90",
"find","end","sub2ind","ind2sub","bsxfun","ndgrid","permute",
"ipermute","shiftdim","circshift","squeeze","isscalar","isvector",
"ans","eps","realmax","realmin","pi","i","inf","nan","isnan",
"isinf","isfinite","j","why","compan","gallery","hadamard","hankel",
"hilb","invhilb","magic","pascal","rosser","toeplitz","vander",
"wilkinson"]
tokens = {
'root': [
# line starting with '!' is sent as a system command. not sure what
# label to use...
(r'^!.*', String.Other),
(r'%\{\s*\n', Comment.Multiline, 'blockcomment'),
(r'%.*$', Comment),
(r'^\s*function', Keyword, 'deffunc'),
# from 'iskeyword' on version 7.11 (R2010):
(r'(break|case|catch|classdef|continue|else|elseif|end|enumerated|'
r'events|for|function|global|if|methods|otherwise|parfor|'
r'persistent|properties|return|spmd|switch|try|while)\b', Keyword),
("(" + "|".join(elfun+specfun+elmat) + r')\b', Name.Builtin),
# line continuation with following comment:
(r'\.\.\..*$', Comment),
# operators:
(r'-|==|~=|<|>|<=|>=|&&|&|~|\|\|?', Operator),
# operators requiring escape for re:
(r'\.\*|\*|\+|\.\^|\.\\|\.\/|\/|\\', Operator),
# punctuation:
(r'\[|\]|\(|\)|\{|\}|:|@|\.|,', Punctuation),
(r'=|:|;', Punctuation),
# quote can be transpose, instead of string:
# (not great, but handles common cases...)
(r'(?<=[\w\)\]])\'', Operator),
(r'(\d+\.\d*|\d*\.\d+)([eEf][+-]?[0-9]+)?', Number.Float),
(r'\d+[eEf][+-]?[0-9]+', Number.Float),
(r'\d+', Number.Integer),
(r'(?<![\w\)\]])\'', String, 'string'),
('[a-zA-Z_][a-zA-Z0-9_]*', Name),
(r'.', Text),
],
'string': [
(r'[^\']*\'', String, '#pop')
],
'blockcomment': [
(r'^\s*%\}', Comment.Multiline, '#pop'),
(r'^.*\n', Comment.Multiline),
(r'.', Comment.Multiline),
],
'deffunc': [
(r'(\s*)(?:(.+)(\s*)(=)(\s*))?(.+)(\()(.*)(\))(\s*)',
bygroups(Text.Whitespace, Text, Text.Whitespace, Punctuation,
Text.Whitespace, Name.Function, Punctuation, Text,
Punctuation, Text.Whitespace), '#pop'),
],
}
def analyse_text(text):
if re.match('^\s*%', text, re.M): # comment
return 0.9
elif re.match('^!\w+', text, re.M): # system cmd
return 0.9
return 0.1
line_re = re.compile('.*?\n')
class MatlabSessionLexer(Lexer):
"""
For Matlab sessions. Modeled after PythonConsoleLexer.
Contributed by Ken Schutte <kschutte@csail.mit.edu>.
*New in Pygments 0.10.*
"""
name = 'Matlab session'
aliases = ['matlabsession']
def get_tokens_unprocessed(self, text):
mlexer = MatlabLexer(**self.options)
curcode = ''
insertions = []
for match in line_re.finditer(text):
line = match.group()
if line.startswith('>>'):
insertions.append((len(curcode),
[(0, Generic.Prompt, line[:3])]))
curcode += line[3:]
elif line.startswith('???'):
idx = len(curcode)
# without is showing error on same line as before...?
line = "\n" + line
token = (0, Generic.Traceback, line)
insertions.append((idx, [token]))
else:
if curcode:
for item in do_insertions(
insertions, mlexer.get_tokens_unprocessed(curcode)):
yield item
curcode = ''
insertions = []
yield match.start(), Generic.Output, line
if curcode: # or item:
for item in do_insertions(
insertions, mlexer.get_tokens_unprocessed(curcode)):
yield item
class OctaveLexer(RegexLexer):
"""
For GNU Octave source code.
*New in Pygments 1.5.*
"""
name = 'Octave'
aliases = ['octave']
filenames = ['*.m']
mimetypes = ['text/octave']
# These lists are generated automatically.
# Run the following in bash shell:
#
# First dump all of the Octave manual into a plain text file:
#
# $ info octave --subnodes -o octave-manual
#
# Now grep through it:
# for i in \
# "Built-in Function" "Command" "Function File" \
# "Loadable Function" "Mapping Function";
# do
# perl -e '@name = qw('"$i"');
# print lc($name[0]),"_kw = [\n"';
#
# perl -n -e 'print "\"$1\",\n" if /-- '"$i"': .* (\w*) \(/;' \
# octave-manual | sort | uniq ;
# echo "]" ;
# echo;
# done
# taken from Octave Mercurial changeset 8cc154f45e37 (30-jan-2011)
builtin_kw = [ "addlistener", "addpath", "addproperty", "all",
"and", "any", "argnames", "argv", "assignin",
"atexit", "autoload",
"available_graphics_toolkits", "beep_on_error",
"bitand", "bitmax", "bitor", "bitshift", "bitxor",
"cat", "cell", "cellstr", "char", "class", "clc",
"columns", "command_line_path",
"completion_append_char", "completion_matches",
"complex", "confirm_recursive_rmdir", "cputime",
"crash_dumps_octave_core", "ctranspose", "cumprod",
"cumsum", "debug_on_error", "debug_on_interrupt",
"debug_on_warning", "default_save_options",
"dellistener", "diag", "diff", "disp",
"doc_cache_file", "do_string_escapes", "double",
"drawnow", "e", "echo_executing_commands", "eps",
"eq", "errno", "errno_list", "error", "eval",
"evalin", "exec", "exist", "exit", "eye", "false",
"fclear", "fclose", "fcntl", "fdisp", "feof",
"ferror", "feval", "fflush", "fgetl", "fgets",
"fieldnames", "file_in_loadpath", "file_in_path",
"filemarker", "filesep", "find_dir_in_path",
"fixed_point_format", "fnmatch", "fopen", "fork",
"formula", "fprintf", "fputs", "fread", "freport",
"frewind", "fscanf", "fseek", "fskipl", "ftell",
"functions", "fwrite", "ge", "genpath", "get",
"getegid", "getenv", "geteuid", "getgid",
"getpgrp", "getpid", "getppid", "getuid", "glob",
"gt", "gui_mode", "history_control",
"history_file", "history_size",
"history_timestamp_format_string", "home",
"horzcat", "hypot", "ifelse",
"ignore_function_time_stamp", "inferiorto",
"info_file", "info_program", "inline", "input",
"intmax", "intmin", "ipermute",
"is_absolute_filename", "isargout", "isbool",
"iscell", "iscellstr", "ischar", "iscomplex",
"isempty", "isfield", "isfloat", "isglobal",
"ishandle", "isieee", "isindex", "isinteger",
"islogical", "ismatrix", "ismethod", "isnull",
"isnumeric", "isobject", "isreal",
"is_rooted_relative_filename", "issorted",
"isstruct", "isvarname", "kbhit", "keyboard",
"kill", "lasterr", "lasterror", "lastwarn",
"ldivide", "le", "length", "link", "linspace",
"logical", "lstat", "lt", "make_absolute_filename",
"makeinfo_program", "max_recursion_depth", "merge",
"methods", "mfilename", "minus", "mislocked",
"mkdir", "mkfifo", "mkstemp", "mldivide", "mlock",
"mouse_wheel_zoom", "mpower", "mrdivide", "mtimes",
"munlock", "nargin", "nargout",
"native_float_format", "ndims", "ne", "nfields",
"nnz", "norm", "not", "numel", "nzmax",
"octave_config_info", "octave_core_file_limit",
"octave_core_file_name",
"octave_core_file_options", "ones", "or",
"output_max_field_width", "output_precision",
"page_output_immediately", "page_screen_output",
"path", "pathsep", "pause", "pclose", "permute",
"pi", "pipe", "plus", "popen", "power",
"print_empty_dimensions", "printf",
"print_struct_array_contents", "prod",
"program_invocation_name", "program_name",
"putenv", "puts", "pwd", "quit", "rats", "rdivide",
"readdir", "readlink", "read_readline_init_file",
"realmax", "realmin", "rehash", "rename",
"repelems", "re_read_readline_init_file", "reset",
"reshape", "resize", "restoredefaultpath",
"rethrow", "rmdir", "rmfield", "rmpath", "rows",
"save_header_format_string", "save_precision",
"saving_history", "scanf", "set", "setenv",
"shell_cmd", "sighup_dumps_octave_core",
"sigterm_dumps_octave_core", "silent_functions",
"single", "size", "size_equal", "sizemax",
"sizeof", "sleep", "source", "sparse_auto_mutate",
"split_long_rows", "sprintf", "squeeze", "sscanf",
"stat", "stderr", "stdin", "stdout", "strcmp",
"strcmpi", "string_fill_char", "strncmp",
"strncmpi", "struct", "struct_levels_to_print",
"strvcat", "subsasgn", "subsref", "sum", "sumsq",
"superiorto", "suppress_verbose_help_message",
"symlink", "system", "tic", "tilde_expand",
"times", "tmpfile", "tmpnam", "toc", "toupper",
"transpose", "true", "typeinfo", "umask", "uminus",
"uname", "undo_string_escapes", "unlink", "uplus",
"upper", "usage", "usleep", "vec", "vectorize",
"vertcat", "waitpid", "warning", "warranty",
"whos_line_format", "yes_or_no", "zeros",
"inf", "Inf", "nan", "NaN"]
command_kw = [ "close", "load", "who", "whos", ]
function_kw = [ "accumarray", "accumdim", "acosd", "acotd",
"acscd", "addtodate", "allchild", "ancestor",
"anova", "arch_fit", "arch_rnd", "arch_test",
"area", "arma_rnd", "arrayfun", "ascii", "asctime",
"asecd", "asind", "assert", "atand",
"autoreg_matrix", "autumn", "axes", "axis", "bar",
"barh", "bartlett", "bartlett_test", "beep",
"betacdf", "betainv", "betapdf", "betarnd",
"bicgstab", "bicubic", "binary", "binocdf",
"binoinv", "binopdf", "binornd", "bitcmp",
"bitget", "bitset", "blackman", "blanks",
"blkdiag", "bone", "box", "brighten", "calendar",
"cast", "cauchy_cdf", "cauchy_inv", "cauchy_pdf",
"cauchy_rnd", "caxis", "celldisp", "center", "cgs",
"chisquare_test_homogeneity",
"chisquare_test_independence", "circshift", "cla",
"clabel", "clf", "clock", "cloglog", "closereq",
"colon", "colorbar", "colormap", "colperm",
"comet", "common_size", "commutation_matrix",
"compan", "compare_versions", "compass",
"computer", "cond", "condest", "contour",
"contourc", "contourf", "contrast", "conv",
"convhull", "cool", "copper", "copyfile", "cor",
"corrcoef", "cor_test", "cosd", "cotd", "cov",
"cplxpair", "cross", "cscd", "cstrcat", "csvread",
"csvwrite", "ctime", "cumtrapz", "curl", "cut",
"cylinder", "date", "datenum", "datestr",
"datetick", "datevec", "dblquad", "deal",
"deblank", "deconv", "delaunay", "delaunayn",
"delete", "demo", "detrend", "diffpara", "diffuse",
"dir", "discrete_cdf", "discrete_inv",
"discrete_pdf", "discrete_rnd", "display",
"divergence", "dlmwrite", "dos", "dsearch",
"dsearchn", "duplication_matrix", "durbinlevinson",
"ellipsoid", "empirical_cdf", "empirical_inv",
"empirical_pdf", "empirical_rnd", "eomday",
"errorbar", "etime", "etreeplot", "example",
"expcdf", "expinv", "expm", "exppdf", "exprnd",
"ezcontour", "ezcontourf", "ezmesh", "ezmeshc",
"ezplot", "ezpolar", "ezsurf", "ezsurfc", "factor",
"factorial", "fail", "fcdf", "feather", "fftconv",
"fftfilt", "fftshift", "figure", "fileattrib",
"fileparts", "fill", "findall", "findobj",
"findstr", "finv", "flag", "flipdim", "fliplr",
"flipud", "fpdf", "fplot", "fractdiff", "freqz",
"freqz_plot", "frnd", "fsolve",
"f_test_regression", "ftp", "fullfile", "fzero",
"gamcdf", "gaminv", "gampdf", "gamrnd", "gca",
"gcbf", "gcbo", "gcf", "genvarname", "geocdf",
"geoinv", "geopdf", "geornd", "getfield", "ginput",
"glpk", "gls", "gplot", "gradient",
"graphics_toolkit", "gray", "grid", "griddata",
"griddatan", "gtext", "gunzip", "gzip", "hadamard",
"hamming", "hankel", "hanning", "hggroup",
"hidden", "hilb", "hist", "histc", "hold", "hot",
"hotelling_test", "housh", "hsv", "hurst",
"hygecdf", "hygeinv", "hygepdf", "hygernd",
"idivide", "ifftshift", "image", "imagesc",
"imfinfo", "imread", "imshow", "imwrite", "index",
"info", "inpolygon", "inputname", "interpft",
"interpn", "intersect", "invhilb", "iqr", "isa",
"isdefinite", "isdir", "is_duplicate_entry",
"isequal", "isequalwithequalnans", "isfigure",
"ishermitian", "ishghandle", "is_leap_year",
"isletter", "ismac", "ismember", "ispc", "isprime",
"isprop", "isscalar", "issquare", "isstrprop",
"issymmetric", "isunix", "is_valid_file_id",
"isvector", "jet", "kendall",
"kolmogorov_smirnov_cdf",
"kolmogorov_smirnov_test", "kruskal_wallis_test",
"krylov", "kurtosis", "laplace_cdf", "laplace_inv",
"laplace_pdf", "laplace_rnd", "legend", "legendre",
"license", "line", "linkprop", "list_primes",
"loadaudio", "loadobj", "logistic_cdf",
"logistic_inv", "logistic_pdf", "logistic_rnd",
"logit", "loglog", "loglogerr", "logm", "logncdf",
"logninv", "lognpdf", "lognrnd", "logspace",
"lookfor", "ls_command", "lsqnonneg", "magic",
"mahalanobis", "manova", "matlabroot",
"mcnemar_test", "mean", "meansq", "median", "menu",
"mesh", "meshc", "meshgrid", "meshz", "mexext",
"mget", "mkpp", "mode", "moment", "movefile",
"mpoles", "mput", "namelengthmax", "nargchk",
"nargoutchk", "nbincdf", "nbininv", "nbinpdf",
"nbinrnd", "nchoosek", "ndgrid", "newplot", "news",
"nonzeros", "normcdf", "normest", "norminv",
"normpdf", "normrnd", "now", "nthroot", "null",
"ocean", "ols", "onenormest", "optimget",
"optimset", "orderfields", "orient", "orth",
"pack", "pareto", "parseparams", "pascal", "patch",
"pathdef", "pcg", "pchip", "pcolor", "pcr",
"peaks", "periodogram", "perl", "perms", "pie",
"pink", "planerot", "playaudio", "plot",
"plotmatrix", "plotyy", "poisscdf", "poissinv",
"poisspdf", "poissrnd", "polar", "poly",
"polyaffine", "polyarea", "polyderiv", "polyfit",
"polygcd", "polyint", "polyout", "polyreduce",
"polyval", "polyvalm", "postpad", "powerset",
"ppder", "ppint", "ppjumps", "ppplot", "ppval",
"pqpnonneg", "prepad", "primes", "print",
"print_usage", "prism", "probit", "qp", "qqplot",
"quadcc", "quadgk", "quadl", "quadv", "quiver",
"qzhess", "rainbow", "randi", "range", "rank",
"ranks", "rat", "reallog", "realpow", "realsqrt",
"record", "rectangle_lw", "rectangle_sw",
"rectint", "refresh", "refreshdata",
"regexptranslate", "repmat", "residue", "ribbon",
"rindex", "roots", "rose", "rosser", "rotdim",
"rref", "run", "run_count", "rundemos", "run_test",
"runtests", "saveas", "saveaudio", "saveobj",
"savepath", "scatter", "secd", "semilogx",
"semilogxerr", "semilogy", "semilogyerr",
"setaudio", "setdiff", "setfield", "setxor",
"shading", "shift", "shiftdim", "sign_test",
"sinc", "sind", "sinetone", "sinewave", "skewness",
"slice", "sombrero", "sortrows", "spaugment",
"spconvert", "spdiags", "spearman", "spectral_adf",
"spectral_xdf", "specular", "speed", "spencer",
"speye", "spfun", "sphere", "spinmap", "spline",
"spones", "sprand", "sprandn", "sprandsym",
"spring", "spstats", "spy", "sqp", "stairs",
"statistics", "std", "stdnormal_cdf",
"stdnormal_inv", "stdnormal_pdf", "stdnormal_rnd",
"stem", "stft", "strcat", "strchr", "strjust",
"strmatch", "strread", "strsplit", "strtok",
"strtrim", "strtrunc", "structfun", "studentize",
"subplot", "subsindex", "subspace", "substr",
"substruct", "summer", "surf", "surface", "surfc",
"surfl", "surfnorm", "svds", "swapbytes",
"sylvester_matrix", "symvar", "synthesis", "table",
"tand", "tar", "tcdf", "tempdir", "tempname",
"test", "text", "textread", "textscan", "tinv",
"title", "toeplitz", "tpdf", "trace", "trapz",
"treelayout", "treeplot", "triangle_lw",
"triangle_sw", "tril", "trimesh", "triplequad",
"triplot", "trisurf", "triu", "trnd", "tsearchn",
"t_test", "t_test_regression", "type", "unidcdf",
"unidinv", "unidpdf", "unidrnd", "unifcdf",
"unifinv", "unifpdf", "unifrnd", "union", "unique",
"unix", "unmkpp", "unpack", "untabify", "untar",
"unwrap", "unzip", "u_test", "validatestring",
"vander", "var", "var_test", "vech", "ver",
"version", "view", "voronoi", "voronoin",
"waitforbuttonpress", "wavread", "wavwrite",
"wblcdf", "wblinv", "wblpdf", "wblrnd", "weekday",
"welch_test", "what", "white", "whitebg",
"wienrnd", "wilcoxon_test", "wilkinson", "winter",
"xlabel", "xlim", "ylabel", "yulewalker", "zip",
"zlabel", "z_test", ]
loadable_kw = [ "airy", "amd", "balance", "besselh", "besseli",
"besselj", "besselk", "bessely", "bitpack",
"bsxfun", "builtin", "ccolamd", "cellfun",
"cellslices", "chol", "choldelete", "cholinsert",
"cholinv", "cholshift", "cholupdate", "colamd",
"colloc", "convhulln", "convn", "csymamd",
"cummax", "cummin", "daspk", "daspk_options",
"dasrt", "dasrt_options", "dassl", "dassl_options",
"dbclear", "dbdown", "dbstack", "dbstatus",
"dbstop", "dbtype", "dbup", "dbwhere", "det",
"dlmread", "dmperm", "dot", "eig", "eigs",
"endgrent", "endpwent", "etree", "fft", "fftn",
"fftw", "filter", "find", "full", "gcd",
"getgrent", "getgrgid", "getgrnam", "getpwent",
"getpwnam", "getpwuid", "getrusage", "givens",
"gmtime", "gnuplot_binary", "hess", "ifft",
"ifftn", "inv", "isdebugmode", "issparse", "kron",
"localtime", "lookup", "lsode", "lsode_options",
"lu", "luinc", "luupdate", "matrix_type", "max",
"min", "mktime", "pinv", "qr", "qrdelete",
"qrinsert", "qrshift", "qrupdate", "quad",
"quad_options", "qz", "rand", "rande", "randg",
"randn", "randp", "randperm", "rcond", "regexp",
"regexpi", "regexprep", "schur", "setgrent",
"setpwent", "sort", "spalloc", "sparse", "spparms",
"sprank", "sqrtm", "strfind", "strftime",
"strptime", "strrep", "svd", "svd_driver", "syl",
"symamd", "symbfact", "symrcm", "time", "tsearch",
"typecast", "urlread", "urlwrite", ]
mapping_kw = [ "abs", "acos", "acosh", "acot", "acoth", "acsc",
"acsch", "angle", "arg", "asec", "asech", "asin",
"asinh", "atan", "atanh", "beta", "betainc",
"betaln", "bincoeff", "cbrt", "ceil", "conj", "cos",
"cosh", "cot", "coth", "csc", "csch", "erf", "erfc",
"erfcx", "erfinv", "exp", "finite", "fix", "floor",
"fmod", "gamma", "gammainc", "gammaln", "imag",
"isalnum", "isalpha", "isascii", "iscntrl",
"isdigit", "isfinite", "isgraph", "isinf",
"islower", "isna", "isnan", "isprint", "ispunct",
"isspace", "isupper", "isxdigit", "lcm", "lgamma",
"log", "lower", "mod", "real", "rem", "round",
"roundb", "sec", "sech", "sign", "sin", "sinh",
"sqrt", "tan", "tanh", "toascii", "tolower", "xor",
]
builtin_consts = [ "EDITOR", "EXEC_PATH", "I", "IMAGE_PATH", "NA",
"OCTAVE_HOME", "OCTAVE_VERSION", "PAGER",
"PAGER_FLAGS", "SEEK_CUR", "SEEK_END", "SEEK_SET",
"SIG", "S_ISBLK", "S_ISCHR", "S_ISDIR", "S_ISFIFO",
"S_ISLNK", "S_ISREG", "S_ISSOCK", "WCONTINUE",
"WCOREDUMP", "WEXITSTATUS", "WIFCONTINUED",
"WIFEXITED", "WIFSIGNALED", "WIFSTOPPED", "WNOHANG",
"WSTOPSIG", "WTERMSIG", "WUNTRACED", ]
tokens = {
'root': [
#We should look into multiline comments
(r'[%#].*$', Comment),
(r'^\s*function', Keyword, 'deffunc'),
# from 'iskeyword' on hg changeset 8cc154f45e37
(r'(__FILE__|__LINE__|break|case|catch|classdef|continue|do|else|'
r'elseif|end|end_try_catch|end_unwind_protect|endclassdef|'
r'endevents|endfor|endfunction|endif|endmethods|endproperties|'
r'endswitch|endwhile|events|for|function|get|global|if|methods|'
r'otherwise|persistent|properties|return|set|static|switch|try|'
r'until|unwind_protect|unwind_protect_cleanup|while)\b', Keyword),
("(" + "|".join( builtin_kw + command_kw
+ function_kw + loadable_kw
+ mapping_kw) + r')\b', Name.Builtin),
("(" + "|".join(builtin_consts) + r')\b', Name.Constant),
# operators in Octave but not Matlab:
(r'-=|!=|!|/=|--', Operator),
# operators:
(r'-|==|~=|<|>|<=|>=|&&|&|~|\|\|?', Operator),
# operators in Octave but not Matlab requiring escape for re:
(r'\*=|\+=|\^=|\/=|\\=|\*\*|\+\+|\.\*\*',Operator),
# operators requiring escape for re:
(r'\.\*|\*|\+|\.\^|\.\\|\.\/|\/|\\', Operator),
# punctuation:
(r'\[|\]|\(|\)|\{|\}|:|@|\.|,', Punctuation),
(r'=|:|;', Punctuation),
(r'"[^"]*"', String),
(r'(\d+\.\d*|\d*\.\d+)([eEf][+-]?[0-9]+)?', Number.Float),
(r'\d+[eEf][+-]?[0-9]+', Number.Float),
(r'\d+', Number.Integer),
# quote can be transpose, instead of string:
# (not great, but handles common cases...)
(r'(?<=[\w\)\]])\'', Operator),
(r'(?<![\w\)\]])\'', String, 'string'),
('[a-zA-Z_][a-zA-Z0-9_]*', Name),
(r'.', Text),
],
'string': [
(r"[^']*'", String, '#pop'),
],
'deffunc': [
(r'(\s*)(?:(.+)(\s*)(=)(\s*))?(.+)(\()(.*)(\))(\s*)',
bygroups(Text.Whitespace, Text, Text.Whitespace, Punctuation,
Text.Whitespace, Name.Function, Punctuation, Text,
Punctuation, Text.Whitespace), '#pop'),
],
}
def analyse_text(text):
if re.match('^\s*[%#]', text, re.M): #Comment
return 0.1
class ScilabLexer(RegexLexer):
"""
For Scilab source code.
*New in Pygments 1.5.*
"""
name = 'Scilab'
aliases = ['scilab']
filenames = ['*.sci', '*.sce', '*.tst']
mimetypes = ['text/scilab']
tokens = {
'root': [
(r'//.*?$', Comment.Single),
(r'^\s*function', Keyword, 'deffunc'),
(r'(__FILE__|__LINE__|break|case|catch|classdef|continue|do|else|'
r'elseif|end|end_try_catch|end_unwind_protect|endclassdef|'
r'endevents|endfor|endfunction|endif|endmethods|endproperties|'
r'endswitch|endwhile|events|for|function|get|global|if|methods|'
r'otherwise|persistent|properties|return|set|static|switch|try|'
r'until|unwind_protect|unwind_protect_cleanup|while)\b', Keyword),
("(" + "|".join(_scilab_builtins.functions_kw +
_scilab_builtins.commands_kw +
_scilab_builtins.macros_kw
) + r')\b', Name.Builtin),
(r'(%s)\b' % "|".join(map(re.escape, _scilab_builtins.builtin_consts)),
Name.Constant),
# operators:
(r'-|==|~=|<|>|<=|>=|&&|&|~|\|\|?', Operator),
# operators requiring escape for re:
(r'\.\*|\*|\+|\.\^|\.\\|\.\/|\/|\\', Operator),
# punctuation:
(r'[\[\](){}@.,=:;]', Punctuation),
(r'"[^"]*"', String),
# quote can be transpose, instead of string:
# (not great, but handles common cases...)
(r'(?<=[\w\)\]])\'', Operator),
(r'(?<![\w\)\]])\'', String, 'string'),
(r'(\d+\.\d*|\d*\.\d+)([eEf][+-]?[0-9]+)?', Number.Float),
(r'\d+[eEf][+-]?[0-9]+', Number.Float),
(r'\d+', Number.Integer),
('[a-zA-Z_][a-zA-Z0-9_]*', Name),
(r'.', Text),
],
'string': [
(r"[^']*'", String, '#pop'),
(r'.', String, '#pop'),
],
'deffunc': [
(r'(\s*)(?:(.+)(\s*)(=)(\s*))?(.+)(\()(.*)(\))(\s*)',
bygroups(Text.Whitespace, Text, Text.Whitespace, Punctuation,
Text.Whitespace, Name.Function, Punctuation, Text,
Punctuation, Text.Whitespace), '#pop'),
],
}
class NumPyLexer(PythonLexer):
"""
A Python lexer recognizing Numerical Python builtins.
*New in Pygments 0.10.*
"""
name = 'NumPy'
aliases = ['numpy']
# override the mimetypes to not inherit them from python
mimetypes = []
filenames = []
EXTRA_KEYWORDS = set([
'abs', 'absolute', 'accumulate', 'add', 'alen', 'all', 'allclose',
'alltrue', 'alterdot', 'amax', 'amin', 'angle', 'any', 'append',
'apply_along_axis', 'apply_over_axes', 'arange', 'arccos', 'arccosh',
'arcsin', 'arcsinh', 'arctan', 'arctan2', 'arctanh', 'argmax', 'argmin',
'argsort', 'argwhere', 'around', 'array', 'array2string', 'array_equal',
'array_equiv', 'array_repr', 'array_split', 'array_str', 'arrayrange',
'asanyarray', 'asarray', 'asarray_chkfinite', 'ascontiguousarray',
'asfarray', 'asfortranarray', 'asmatrix', 'asscalar', 'astype',
'atleast_1d', 'atleast_2d', 'atleast_3d', 'average', 'bartlett',
'base_repr', 'beta', 'binary_repr', 'bincount', 'binomial',
'bitwise_and', 'bitwise_not', 'bitwise_or', 'bitwise_xor', 'blackman',
'bmat', 'broadcast', 'byte_bounds', 'bytes', 'byteswap', 'c_',
'can_cast', 'ceil', 'choose', 'clip', 'column_stack', 'common_type',
'compare_chararrays', 'compress', 'concatenate', 'conj', 'conjugate',
'convolve', 'copy', 'corrcoef', 'correlate', 'cos', 'cosh', 'cov',
'cross', 'cumprod', 'cumproduct', 'cumsum', 'delete', 'deprecate',
'diag', 'diagflat', 'diagonal', 'diff', 'digitize', 'disp', 'divide',
'dot', 'dsplit', 'dstack', 'dtype', 'dump', 'dumps', 'ediff1d', 'empty',
'empty_like', 'equal', 'exp', 'expand_dims', 'expm1', 'extract', 'eye',
'fabs', 'fastCopyAndTranspose', 'fft', 'fftfreq', 'fftshift', 'fill',
'finfo', 'fix', 'flat', 'flatnonzero', 'flatten', 'fliplr', 'flipud',
'floor', 'floor_divide', 'fmod', 'frexp', 'fromarrays', 'frombuffer',
'fromfile', 'fromfunction', 'fromiter', 'frompyfunc', 'fromstring',
'generic', 'get_array_wrap', 'get_include', 'get_numarray_include',
'get_numpy_include', 'get_printoptions', 'getbuffer', 'getbufsize',
'geterr', 'geterrcall', 'geterrobj', 'getfield', 'gradient', 'greater',
'greater_equal', 'gumbel', 'hamming', 'hanning', 'histogram',
'histogram2d', 'histogramdd', 'hsplit', 'hstack', 'hypot', 'i0',
'identity', 'ifft', 'imag', 'index_exp', 'indices', 'inf', 'info',
'inner', 'insert', 'int_asbuffer', 'interp', 'intersect1d',
'intersect1d_nu', 'inv', 'invert', 'iscomplex', 'iscomplexobj',
'isfinite', 'isfortran', 'isinf', 'isnan', 'isneginf', 'isposinf',
'isreal', 'isrealobj', 'isscalar', 'issctype', 'issubclass_',
'issubdtype', 'issubsctype', 'item', 'itemset', 'iterable', 'ix_',
'kaiser', 'kron', 'ldexp', 'left_shift', 'less', 'less_equal', 'lexsort',
'linspace', 'load', 'loads', 'loadtxt', 'log', 'log10', 'log1p', 'log2',
'logical_and', 'logical_not', 'logical_or', 'logical_xor', 'logspace',
'lstsq', 'mat', 'matrix', 'max', 'maximum', 'maximum_sctype',
'may_share_memory', 'mean', 'median', 'meshgrid', 'mgrid', 'min',
'minimum', 'mintypecode', 'mod', 'modf', 'msort', 'multiply', 'nan',
'nan_to_num', 'nanargmax', 'nanargmin', 'nanmax', 'nanmin', 'nansum',
'ndenumerate', 'ndim', 'ndindex', 'negative', 'newaxis', 'newbuffer',
'newbyteorder', 'nonzero', 'not_equal', 'obj2sctype', 'ogrid', 'ones',
'ones_like', 'outer', 'permutation', 'piecewise', 'pinv', 'pkgload',
'place', 'poisson', 'poly', 'poly1d', 'polyadd', 'polyder', 'polydiv',
'polyfit', 'polyint', 'polymul', 'polysub', 'polyval', 'power', 'prod',
'product', 'ptp', 'put', 'putmask', 'r_', 'randint', 'random_integers',
'random_sample', 'ranf', 'rank', 'ravel', 'real', 'real_if_close',
'recarray', 'reciprocal', 'reduce', 'remainder', 'repeat', 'require',
'reshape', 'resize', 'restoredot', 'right_shift', 'rint', 'roll',
'rollaxis', 'roots', 'rot90', 'round', 'round_', 'row_stack', 's_',
'sample', 'savetxt', 'sctype2char', 'searchsorted', 'seed', 'select',
'set_numeric_ops', 'set_printoptions', 'set_string_function',
'setbufsize', 'setdiff1d', 'seterr', 'seterrcall', 'seterrobj',
'setfield', 'setflags', 'setmember1d', 'setxor1d', 'shape',
'show_config', 'shuffle', 'sign', 'signbit', 'sin', 'sinc', 'sinh',
'size', 'slice', 'solve', 'sometrue', 'sort', 'sort_complex', 'source',
'split', 'sqrt', 'square', 'squeeze', 'standard_normal', 'std',
'subtract', 'sum', 'svd', 'swapaxes', 'take', 'tan', 'tanh', 'tensordot',
'test', 'tile', 'tofile', 'tolist', 'tostring', 'trace', 'transpose',
'trapz', 'tri', 'tril', 'trim_zeros', 'triu', 'true_divide', 'typeDict',
'typename', 'uniform', 'union1d', 'unique', 'unique1d', 'unravel_index',
'unwrap', 'vander', 'var', 'vdot', 'vectorize', 'view', 'vonmises',
'vsplit', 'vstack', 'weibull', 'where', 'who', 'zeros', 'zeros_like'
])
def get_tokens_unprocessed(self, text):
for index, token, value in \
PythonLexer.get_tokens_unprocessed(self, text):
if token is Name and value in self.EXTRA_KEYWORDS:
yield index, Keyword.Pseudo, value
else:
yield index, token, value
def analyse_text(text):
return (shebang_matches(text, r'pythonw?(2(\.\d)?)?') or
'import ' in text[:1000]) \
and ('import numpy' in text or 'from numpy import' in text)
class RConsoleLexer(Lexer):
"""
For R console transcripts or R CMD BATCH output files.
"""
name = 'RConsole'
aliases = ['rconsole', 'rout']
filenames = ['*.Rout']
def get_tokens_unprocessed(self, text):
slexer = SLexer(**self.options)
current_code_block = ''
insertions = []
for match in line_re.finditer(text):
line = match.group()
if line.startswith('>') or line.startswith('+'):
# Colorize the prompt as such,
# then put rest of line into current_code_block
insertions.append((len(current_code_block),
[(0, Generic.Prompt, line[:2])]))
current_code_block += line[2:]
else:
# We have reached a non-prompt line!
# If we have stored prompt lines, need to process them first.
if current_code_block:
# Weave together the prompts and highlight code.
for item in do_insertions(insertions,
slexer.get_tokens_unprocessed(current_code_block)):
yield item
# Reset vars for next code block.
current_code_block = ''
insertions = []
# Now process the actual line itself, this is output from R.
yield match.start(), Generic.Output, line
# If we happen to end on a code block with nothing after it, need to
# process the last code block. This is neither elegant nor DRY so
# should be changed.
if current_code_block:
for item in do_insertions(insertions,
slexer.get_tokens_unprocessed(current_code_block)):
yield item
class SLexer(RegexLexer):
"""
For S, S-plus, and R source code.
*New in Pygments 0.10.*
"""
name = 'S'
aliases = ['splus', 's', 'r']
filenames = ['*.S', '*.R', '.Rhistory', '.Rprofile']
mimetypes = ['text/S-plus', 'text/S', 'text/x-r-source', 'text/x-r',
'text/x-R', 'text/x-r-history', 'text/x-r-profile']
tokens = {
'comments': [
(r'#.*$', Comment.Single),
],
'valid_name': [
(r'[a-zA-Z][0-9a-zA-Z\._]*', Text),
# can begin with ., but not if that is followed by a digit
(r'\.[a-zA-Z_][0-9a-zA-Z\._]*', Text),
],
'punctuation': [
(r'\[{1,2}|\]{1,2}|\(|\)|;|,', Punctuation),
],
'keywords': [
(r'(if|else|for|while|repeat|in|next|break|return|switch|function)'
r'(?![0-9a-zA-Z\._])',
Keyword.Reserved)
],
'operators': [
(r'<<?-|->>?|-|==|<=|>=|<|>|&&?|!=|\|\|?|\?', Operator),
(r'\*|\+|\^|/|!|%[^%]*%|=|~|\$|@|:{1,3}', Operator)
],
'builtin_symbols': [
(r'(NULL|NA(_(integer|real|complex|character)_)?|'
r'Inf|TRUE|FALSE|NaN|\.\.(\.|[0-9]+))'
r'(?![0-9a-zA-Z\._])',
Keyword.Constant),
(r'(T|F)\b', Keyword.Variable),
],
'numbers': [
# hex number
(r'0[xX][a-fA-F0-9]+([pP][0-9]+)?[Li]?', Number.Hex),
# decimal number
(r'[+-]?([0-9]+(\.[0-9]+)?|\.[0-9]+)([eE][+-]?[0-9]+)?[Li]?',
Number),
],
'statements': [
include('comments'),
# whitespaces
(r'\s+', Text),
(r'`.*?`', String.Backtick),
(r'\'', String, 'string_squote'),
(r'\"', String, 'string_dquote'),
include('builtin_symbols'),
include('numbers'),
include('keywords'),
include('punctuation'),
include('operators'),
include('valid_name'),
],
'root': [
include('statements'),
# blocks:
(r'\{|\}', Punctuation),
#(r'\{', Punctuation, 'block'),
(r'.', Text),
],
#'block': [
# include('statements'),
# ('\{', Punctuation, '#push'),
# ('\}', Punctuation, '#pop')
#],
'string_squote': [
(r'([^\'\\]|\\.)*\'', String, '#pop'),
],
'string_dquote': [
(r'([^"\\]|\\.)*"', String, '#pop'),
],
}
def analyse_text(text):
if re.search(r'[a-z0-9_\])\s]<-(?!-)', text):
return 0.11
class BugsLexer(RegexLexer):
"""
Pygments Lexer for `OpenBugs <http://www.openbugs.info/w/>`_ and WinBugs
models.
*New in Pygments 1.6.*
"""
name = 'BUGS'
aliases = ['bugs', 'winbugs', 'openbugs']
filenames = ['*.bug']
_FUNCTIONS = [
# Scalar functions
'abs', 'arccos', 'arccosh', 'arcsin', 'arcsinh', 'arctan', 'arctanh',
'cloglog', 'cos', 'cosh', 'cumulative', 'cut', 'density', 'deviance',
'equals', 'expr', 'gammap', 'ilogit', 'icloglog', 'integral', 'log',
'logfact', 'loggam', 'logit', 'max', 'min', 'phi', 'post.p.value',
'pow', 'prior.p.value', 'probit', 'replicate.post', 'replicate.prior',
'round', 'sin', 'sinh', 'solution', 'sqrt', 'step', 'tan', 'tanh',
'trunc',
# Vector functions
'inprod', 'interp.lin', 'inverse', 'logdet', 'mean', 'eigen.vals',
'ode', 'prod', 'p.valueM', 'rank', 'ranked', 'replicate.postM',
'sd', 'sort', 'sum',
## Special
'D', 'I', 'F', 'T', 'C']
""" OpenBUGS built-in functions
From http://www.openbugs.info/Manuals/ModelSpecification.html#ContentsAII
This also includes
- T, C, I : Truncation and censoring.
``T`` and ``C`` are in OpenBUGS. ``I`` in WinBUGS.
- D : ODE
- F : Functional http://www.openbugs.info/Examples/Functionals.html
"""
_DISTRIBUTIONS = ['dbern', 'dbin', 'dcat', 'dnegbin', 'dpois',
'dhyper', 'dbeta', 'dchisqr', 'ddexp', 'dexp',
'dflat', 'dgamma', 'dgev', 'df', 'dggamma', 'dgpar',
'dloglik', 'dlnorm', 'dlogis', 'dnorm', 'dpar',
'dt', 'dunif', 'dweib', 'dmulti', 'ddirch', 'dmnorm',
'dmt', 'dwish']
""" OpenBUGS built-in distributions
Functions from
http://www.openbugs.info/Manuals/ModelSpecification.html#ContentsAI
"""
tokens = {
'whitespace' : [
(r"\s+", Text),
],
'comments' : [
# Comments
(r'#.*$', Comment.Single),
],
'root': [
# Comments
include('comments'),
include('whitespace'),
# Block start
(r'(model)(\s+)({)',
bygroups(Keyword.Namespace, Text, Punctuation)),
# Reserved Words
(r'(for|in)(?![0-9a-zA-Z\._])', Keyword.Reserved),
# Built-in Functions
(r'(%s)(?=\s*\()'
% r'|'.join(_FUNCTIONS + _DISTRIBUTIONS),
Name.Builtin),
# Regular variable names
(r'[A-Za-z][A-Za-z0-9_.]*', Name),
# Number Literals
(r'[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?', Number),
# Punctuation
(r'\[|\]|\(|\)|:|,|;', Punctuation),
# Assignment operators
# SLexer makes these tokens Operators.
(r'<-|~', Operator),
# Infix and prefix operators
(r'\+|-|\*|/', Operator),
# Block
(r'[{}]', Punctuation),
]
}
def analyse_text(text):
if re.search(r"^\s*model\s*{", text, re.M):
return 0.7
else:
return 0.0
class JagsLexer(RegexLexer):
"""
Pygments Lexer for JAGS.
*New in Pygments 1.6.*
"""
name = 'JAGS'
aliases = ['jags']
filenames = ['*.jag', '*.bug']
## JAGS
_FUNCTIONS = [
'abs', 'arccos', 'arccosh', 'arcsin', 'arcsinh', 'arctan', 'arctanh',
'cos', 'cosh', 'cloglog',
'equals', 'exp', 'icloglog', 'ifelse', 'ilogit', 'log', 'logfact',
'loggam', 'logit', 'phi', 'pow', 'probit', 'round', 'sin', 'sinh',
'sqrt', 'step', 'tan', 'tanh', 'trunc', 'inprod', 'interp.lin',
'logdet', 'max', 'mean', 'min', 'prod', 'sum', 'sd', 'inverse',
'rank', 'sort', 't', 'acos', 'acosh', 'asin', 'asinh', 'atan',
# Truncation/Censoring (should I include)
'T', 'I']
# Distributions with density, probability and quartile functions
_DISTRIBUTIONS = ['[dpq]%s' % x for x in
['bern', 'beta', 'dchiqsqr', 'ddexp', 'dexp',
'df', 'gamma', 'gen.gamma', 'logis', 'lnorm',
'negbin', 'nchisqr', 'norm', 'par', 'pois', 'weib']]
# Other distributions without density and probability
_OTHER_DISTRIBUTIONS = [
'dt', 'dunif', 'dbetabin', 'dbern', 'dbin', 'dcat', 'dhyper',
'ddirch', 'dmnorm', 'dwish', 'dmt', 'dmulti', 'dbinom', 'dchisq',
'dnbinom', 'dweibull', 'ddirich']
tokens = {
'whitespace' : [
(r"\s+", Text),
],
'names' : [
# Regular variable names
(r'[a-zA-Z][a-zA-Z0-9_.]*\b', Name),
],
'comments' : [
# do not use stateful comments
(r'(?s)/\*.*?\*/', Comment.Multiline),
# Comments
(r'#.*$', Comment.Single),
],
'root': [
# Comments
include('comments'),
include('whitespace'),
# Block start
(r'(model|data)(\s+)({)',
bygroups(Keyword.Namespace, Text, Punctuation)),
(r'var(?![0-9a-zA-Z\._])', Keyword.Declaration),
# Reserved Words
(r'(for|in)(?![0-9a-zA-Z\._])', Keyword.Reserved),
# Builtins
# Need to use lookahead because . is a valid char
(r'(%s)(?=\s*\()' % r'|'.join(_FUNCTIONS
+ _DISTRIBUTIONS
+ _OTHER_DISTRIBUTIONS),
Name.Builtin),
# Names
include('names'),
# Number Literals
(r'[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?', Number),
(r'\[|\]|\(|\)|:|,|;', Punctuation),
# Assignment operators
(r'<-|~', Operator),
# # JAGS includes many more than OpenBUGS
(r'\+|-|\*|\/|\|\|[&]{2}|[<>=]=?|\^|%.*?%', Operator),
(r'[{}]', Punctuation),
]
}
def analyse_text(text):
if re.search(r'^\s*model\s*\{', text, re.M):
if re.search(r'^\s*data\s*\{', text, re.M):
return 0.9
elif re.search(r'^\s*var', text, re.M):
return 0.9
else:
return 0.3
else:
return 0
class StanLexer(RegexLexer):
"""Pygments Lexer for Stan models.
The Stan modeling language is specified in the *Stan 1.3.0
Modeling Language Manual* `pdf
<http://code.google.com/p/stan/downloads/detail?name=stan-reference-1.3.0.pdf>`_.
*New in Pygments 1.6.*
"""
name = 'Stan'
aliases = ['stan']
filenames = ['*.stan']
tokens = {
'whitespace' : [
(r"\s+", Text),
],
'comments' : [
(r'(?s)/\*.*?\*/', Comment.Multiline),
# Comments
(r'(//|#).*$', Comment.Single),
],
'root': [
# Stan is more restrictive on strings than this regex
(r'"[^"]*"', String),
# Comments
include('comments'),
# block start
include('whitespace'),
# Block start
(r'(%s)(\s*)({)' %
r'|'.join(('data', r'transformed\s+?data',
'parameters', r'transformed\s+parameters',
'model', r'generated\s+quantities')),
bygroups(Keyword.Namespace, Text, Punctuation)),
# Reserved Words
(r'(%s)\b' % r'|'.join(_stan_builtins.KEYWORDS), Keyword),
# Truncation
(r'T(?=\s*\[)', Keyword),
# Data types
(r'(%s)\b' % r'|'.join(_stan_builtins.TYPES), Keyword.Type),
# Punctuation
(r"[;:,\[\]()]", Punctuation),
# Builtin
(r'(%s)(?=\s*\()'
% r'|'.join(_stan_builtins.FUNCTIONS
+ _stan_builtins.DISTRIBUTIONS),
Name.Builtin),
# Special names ending in __, like lp__
(r'[A-Za-z][A-Za-z0-9_]*__\b', Name.Builtin.Pseudo),
(r'(%s)\b' % r'|'.join(_stan_builtins.RESERVED), Keyword.Reserved),
# Regular variable names
(r'[A-Za-z][A-Za-z0-9_]*\b', Name),
# Real Literals
(r'-?[0-9]+(\.[0-9]+)?[eE]-?[0-9]+', Number.Float),
(r'-?[0-9]*\.[0-9]*', Number.Float),
# Integer Literals
(r'-?[0-9]+', Number.Integer),
# Assignment operators
# SLexer makes these tokens Operators.
(r'<-|~', Operator),
# Infix and prefix operators (and = )
(r"\+|-|\.?\*|\.?/|\\|'|==?|!=?|<=?|>=?|\|\||&&", Operator),
# Block delimiters
(r'[{}]', Punctuation),
]
}
def analyse_text(text):
if re.search(r'^\s*parameters\s*\{', text, re.M):
return 1.0
else:
return 0.0
class IDLLexer(RegexLexer):
"""
Pygments Lexer for IDL (Interactive Data Language).
*New in Pygments 1.6.*
"""
name = 'IDL'
aliases = ['idl']
filenames = ['*.pro']
mimetypes = ['text/idl']
_RESERVED = ['and', 'begin', 'break', 'case', 'common', 'compile_opt',
'continue', 'do', 'else', 'end', 'endcase', 'elseelse',
'endfor', 'endforeach', 'endif', 'endrep', 'endswitch',
'endwhile', 'eq', 'for', 'foreach', 'forward_function',
'function', 'ge', 'goto', 'gt', 'if', 'inherits', 'le',
'lt', 'mod', 'ne', 'not', 'of', 'on_ioerror', 'or', 'pro',
'repeat', 'switch', 'then', 'until', 'while', 'xor']
"""Reserved words from: http://www.exelisvis.com/docs/reswords.html"""
_BUILTIN_LIB = ['abs', 'acos', 'adapt_hist_equal', 'alog', 'alog10',
'amoeba', 'annotate', 'app_user_dir', 'app_user_dir_query',
'arg_present', 'array_equal', 'array_indices', 'arrow',
'ascii_template', 'asin', 'assoc', 'atan', 'axis',
'a_correlate', 'bandpass_filter', 'bandreject_filter',
'barplot', 'bar_plot', 'beseli', 'beselj', 'beselk',
'besely', 'beta', 'bilinear', 'binary_template', 'bindgen',
'binomial', 'bin_date', 'bit_ffs', 'bit_population',
'blas_axpy', 'blk_con', 'box_cursor', 'breakpoint',
'broyden', 'butterworth', 'bytarr', 'byte', 'byteorder',
'bytscl', 'caldat', 'calendar', 'call_external',
'call_function', 'call_method', 'call_procedure', 'canny',
'catch', 'cd', 'cdf_[0-9a-za-z_]*', 'ceil', 'chebyshev',
'check_math',
'chisqr_cvf', 'chisqr_pdf', 'choldc', 'cholsol', 'cindgen',
'cir_3pnt', 'close', 'cluster', 'cluster_tree', 'clust_wts',
'cmyk_convert', 'colorbar', 'colorize_sample',
'colormap_applicable', 'colormap_gradient',
'colormap_rotation', 'colortable', 'color_convert',
'color_exchange', 'color_quan', 'color_range_map', 'comfit',
'command_line_args', 'complex', 'complexarr', 'complexround',
'compute_mesh_normals', 'cond', 'congrid', 'conj',
'constrained_min', 'contour', 'convert_coord', 'convol',
'convol_fft', 'coord2to3', 'copy_lun', 'correlate', 'cos',
'cosh', 'cpu', 'cramer', 'create_cursor', 'create_struct',
'create_view', 'crossp', 'crvlength', 'cti_test',
'ct_luminance', 'cursor', 'curvefit', 'cvttobm', 'cv_coord',
'cw_animate', 'cw_animate_getp', 'cw_animate_load',
'cw_animate_run', 'cw_arcball', 'cw_bgroup', 'cw_clr_index',
'cw_colorsel', 'cw_defroi', 'cw_field', 'cw_filesel',
'cw_form', 'cw_fslider', 'cw_light_editor',
'cw_light_editor_get', 'cw_light_editor_set', 'cw_orient',
'cw_palette_editor', 'cw_palette_editor_get',
'cw_palette_editor_set', 'cw_pdmenu', 'cw_rgbslider',
'cw_tmpl', 'cw_zoom', 'c_correlate', 'dblarr', 'db_exists',
'dcindgen', 'dcomplex', 'dcomplexarr', 'define_key',
'define_msgblk', 'define_msgblk_from_file', 'defroi',
'defsysv', 'delvar', 'dendrogram', 'dendro_plot', 'deriv',
'derivsig', 'determ', 'device', 'dfpmin', 'diag_matrix',
'dialog_dbconnect', 'dialog_message', 'dialog_pickfile',
'dialog_printersetup', 'dialog_printjob',
'dialog_read_image', 'dialog_write_image', 'digital_filter',
'dilate', 'dindgen', 'dissolve', 'dist', 'distance_measure',
'dlm_load', 'dlm_register', 'doc_library', 'double',
'draw_roi', 'edge_dog', 'efont', 'eigenql', 'eigenvec',
'ellipse', 'elmhes', 'emboss', 'empty', 'enable_sysrtn',
'eof', 'eos_[0-9a-za-z_]*', 'erase', 'erf', 'erfc', 'erfcx',
'erode', 'errorplot', 'errplot', 'estimator_filter',
'execute', 'exit', 'exp', 'expand', 'expand_path', 'expint',
'extrac', 'extract_slice', 'factorial', 'fft', 'filepath',
'file_basename', 'file_chmod', 'file_copy', 'file_delete',
'file_dirname', 'file_expand_path', 'file_info',
'file_lines', 'file_link', 'file_mkdir', 'file_move',
'file_poll_input', 'file_readlink', 'file_same',
'file_search', 'file_test', 'file_which', 'findgen',
'finite', 'fix', 'flick', 'float', 'floor', 'flow3',
'fltarr', 'flush', 'format_axis_values', 'free_lun',
'fstat', 'fulstr', 'funct', 'fv_test', 'fx_root',
'fz_roots', 'f_cvf', 'f_pdf', 'gamma', 'gamma_ct',
'gauss2dfit', 'gaussfit', 'gaussian_function', 'gaussint',
'gauss_cvf', 'gauss_pdf', 'gauss_smooth', 'getenv',
'getwindows', 'get_drive_list', 'get_dxf_objects',
'get_kbrd', 'get_login_info', 'get_lun', 'get_screen_size',
'greg2jul', 'grib_[0-9a-za-z_]*', 'grid3', 'griddata',
'grid_input', 'grid_tps', 'gs_iter',
'h5[adfgirst]_[0-9a-za-z_]*', 'h5_browser', 'h5_close',
'h5_create', 'h5_get_libversion', 'h5_open', 'h5_parse',
'hanning', 'hash', 'hdf_[0-9a-za-z_]*', 'heap_free',
'heap_gc', 'heap_nosave', 'heap_refcount', 'heap_save',
'help', 'hilbert', 'histogram', 'hist_2d', 'hist_equal',
'hls', 'hough', 'hqr', 'hsv', 'h_eq_ct', 'h_eq_int',
'i18n_multibytetoutf8', 'i18n_multibytetowidechar',
'i18n_utf8tomultibyte', 'i18n_widechartomultibyte',
'ibeta', 'icontour', 'iconvertcoord', 'idelete', 'identity',
'idlexbr_assistant', 'idlitsys_createtool', 'idl_base64',
'idl_validname', 'iellipse', 'igamma', 'igetcurrent',
'igetdata', 'igetid', 'igetproperty', 'iimage', 'image',
'image_cont', 'image_statistics', 'imaginary', 'imap',
'indgen', 'intarr', 'interpol', 'interpolate',
'interval_volume', 'int_2d', 'int_3d', 'int_tabulated',
'invert', 'ioctl', 'iopen', 'iplot', 'ipolygon',
'ipolyline', 'iputdata', 'iregister', 'ireset', 'iresolve',
'irotate', 'ir_filter', 'isa', 'isave', 'iscale',
'isetcurrent', 'isetproperty', 'ishft', 'isocontour',
'isosurface', 'isurface', 'itext', 'itranslate', 'ivector',
'ivolume', 'izoom', 'i_beta', 'journal', 'json_parse',
'json_serialize', 'jul2greg', 'julday', 'keyword_set',
'krig2d', 'kurtosis', 'kw_test', 'l64indgen', 'label_date',
'label_region', 'ladfit', 'laguerre', 'laplacian',
'la_choldc', 'la_cholmprove', 'la_cholsol', 'la_determ',
'la_eigenproblem', 'la_eigenql', 'la_eigenvec', 'la_elmhes',
'la_gm_linear_model', 'la_hqr', 'la_invert',
'la_least_squares', 'la_least_square_equality',
'la_linear_equation', 'la_ludc', 'la_lumprove', 'la_lusol',
'la_svd', 'la_tridc', 'la_trimprove', 'la_triql',
'la_trired', 'la_trisol', 'least_squares_filter', 'leefilt',
'legend', 'legendre', 'linbcg', 'lindgen', 'linfit',
'linkimage', 'list', 'll_arc_distance', 'lmfit', 'lmgr',
'lngamma', 'lnp_test', 'loadct', 'locale_get',
'logical_and', 'logical_or', 'logical_true', 'lon64arr',
'lonarr', 'long', 'long64', 'lsode', 'ludc', 'lumprove',
'lusol', 'lu_complex', 'machar', 'make_array', 'make_dll',
'make_rt', 'map', 'mapcontinents', 'mapgrid', 'map_2points',
'map_continents', 'map_grid', 'map_image', 'map_patch',
'map_proj_forward', 'map_proj_image', 'map_proj_info',
'map_proj_init', 'map_proj_inverse', 'map_set',
'matrix_multiply', 'matrix_power', 'max', 'md_test',
'mean', 'meanabsdev', 'mean_filter', 'median', 'memory',
'mesh_clip', 'mesh_decimate', 'mesh_issolid', 'mesh_merge',
'mesh_numtriangles', 'mesh_obj', 'mesh_smooth',
'mesh_surfacearea', 'mesh_validate', 'mesh_volume',
'message', 'min', 'min_curve_surf', 'mk_html_help',
'modifyct', 'moment', 'morph_close', 'morph_distance',
'morph_gradient', 'morph_hitormiss', 'morph_open',
'morph_thin', 'morph_tophat', 'multi', 'm_correlate',
'ncdf_[0-9a-za-z_]*', 'newton', 'noise_hurl', 'noise_pick',
'noise_scatter', 'noise_slur', 'norm', 'n_elements',
'n_params', 'n_tags', 'objarr', 'obj_class', 'obj_destroy',
'obj_hasmethod', 'obj_isa', 'obj_new', 'obj_valid',
'online_help', 'on_error', 'open', 'oplot', 'oploterr',
'parse_url', 'particle_trace', 'path_cache', 'path_sep',
'pcomp', 'plot', 'plot3d', 'ploterr', 'plots', 'plot_3dbox',
'plot_field', 'pnt_line', 'point_lun', 'polarplot',
'polar_contour', 'polar_surface', 'poly', 'polyfill',
'polyfillv', 'polygon', 'polyline', 'polyshade', 'polywarp',
'poly_2d', 'poly_area', 'poly_fit', 'popd', 'powell',
'pref_commit', 'pref_get', 'pref_set', 'prewitt', 'primes',
'print', 'printd', 'product', 'profile', 'profiler',
'profiles', 'project_vol', 'psafm', 'pseudo',
'ps_show_fonts', 'ptrarr', 'ptr_free', 'ptr_new',
'ptr_valid', 'pushd', 'p_correlate', 'qgrid3', 'qhull',
'qromb', 'qromo', 'qsimp', 'query_ascii', 'query_bmp',
'query_csv', 'query_dicom', 'query_gif', 'query_image',
'query_jpeg', 'query_jpeg2000', 'query_mrsid', 'query_pict',
'query_png', 'query_ppm', 'query_srf', 'query_tiff',
'query_wav', 'radon', 'randomn', 'randomu', 'ranks',
'rdpix', 'read', 'reads', 'readu', 'read_ascii',
'read_binary', 'read_bmp', 'read_csv', 'read_dicom',
'read_gif', 'read_image', 'read_interfile', 'read_jpeg',
'read_jpeg2000', 'read_mrsid', 'read_pict', 'read_png',
'read_ppm', 'read_spr', 'read_srf', 'read_sylk',
'read_tiff', 'read_wav', 'read_wave', 'read_x11_bitmap',
'read_xwd', 'real_part', 'rebin', 'recall_commands',
'recon3', 'reduce_colors', 'reform', 'region_grow',
'register_cursor', 'regress', 'replicate',
'replicate_inplace', 'resolve_all', 'resolve_routine',
'restore', 'retall', 'return', 'reverse', 'rk4', 'roberts',
'rot', 'rotate', 'round', 'routine_filepath',
'routine_info', 'rs_test', 'r_correlate', 'r_test',
'save', 'savgol', 'scale3', 'scale3d', 'scope_level',
'scope_traceback', 'scope_varfetch', 'scope_varname',
'search2d', 'search3d', 'sem_create', 'sem_delete',
'sem_lock', 'sem_release', 'setenv', 'set_plot',
'set_shading', 'sfit', 'shade_surf', 'shade_surf_irr',
'shade_volume', 'shift', 'shift_diff', 'shmdebug', 'shmmap',
'shmunmap', 'shmvar', 'show3', 'showfont', 'simplex', 'sin',
'sindgen', 'sinh', 'size', 'skewness', 'skip_lun',
'slicer3', 'slide_image', 'smooth', 'sobel', 'socket',
'sort', 'spawn', 'spher_harm', 'sph_4pnt', 'sph_scat',
'spline', 'spline_p', 'spl_init', 'spl_interp', 'sprsab',
'sprsax', 'sprsin', 'sprstp', 'sqrt', 'standardize',
'stddev', 'stop', 'strarr', 'strcmp', 'strcompress',
'streamline', 'stregex', 'stretch', 'string', 'strjoin',
'strlen', 'strlowcase', 'strmatch', 'strmessage', 'strmid',
'strpos', 'strput', 'strsplit', 'strtrim', 'struct_assign',
'struct_hide', 'strupcase', 'surface', 'surfr', 'svdc',
'svdfit', 'svsol', 'swap_endian', 'swap_endian_inplace',
'symbol', 'systime', 's_test', 't3d', 'tag_names', 'tan',
'tanh', 'tek_color', 'temporary', 'tetra_clip',
'tetra_surface', 'tetra_volume', 'text', 'thin', 'threed',
'timegen', 'time_test2', 'tm_test', 'total', 'trace',
'transpose', 'triangulate', 'trigrid', 'triql', 'trired',
'trisol', 'tri_surf', 'truncate_lun', 'ts_coef', 'ts_diff',
'ts_fcast', 'ts_smooth', 'tv', 'tvcrs', 'tvlct', 'tvrd',
'tvscl', 'typename', 't_cvt', 't_pdf', 'uindgen', 'uint',
'uintarr', 'ul64indgen', 'ulindgen', 'ulon64arr', 'ulonarr',
'ulong', 'ulong64', 'uniq', 'unsharp_mask', 'usersym',
'value_locate', 'variance', 'vector', 'vector_field', 'vel',
'velovect', 'vert_t3d', 'voigt', 'voronoi', 'voxel_proj',
'wait', 'warp_tri', 'watershed', 'wdelete', 'wf_draw',
'where', 'widget_base', 'widget_button', 'widget_combobox',
'widget_control', 'widget_displaycontextmen', 'widget_draw',
'widget_droplist', 'widget_event', 'widget_info',
'widget_label', 'widget_list', 'widget_propertysheet',
'widget_slider', 'widget_tab', 'widget_table',
'widget_text', 'widget_tree', 'widget_tree_move',
'widget_window', 'wiener_filter', 'window', 'writeu',
'write_bmp', 'write_csv', 'write_gif', 'write_image',
'write_jpeg', 'write_jpeg2000', 'write_nrif', 'write_pict',
'write_png', 'write_ppm', 'write_spr', 'write_srf',
'write_sylk', 'write_tiff', 'write_wav', 'write_wave',
'wset', 'wshow', 'wtn', 'wv_applet', 'wv_cwt',
'wv_cw_wavelet', 'wv_denoise', 'wv_dwt', 'wv_fn_coiflet',
'wv_fn_daubechies', 'wv_fn_gaussian', 'wv_fn_haar',
'wv_fn_morlet', 'wv_fn_paul', 'wv_fn_symlet',
'wv_import_data', 'wv_import_wavelet', 'wv_plot3d_wps',
'wv_plot_multires', 'wv_pwt', 'wv_tool_denoise',
'xbm_edit', 'xdisplayfile', 'xdxf', 'xfont',
'xinteranimate', 'xloadct', 'xmanager', 'xmng_tmpl',
'xmtool', 'xobjview', 'xobjview_rotate',
'xobjview_write_image', 'xpalette', 'xpcolor', 'xplot3d',
'xregistered', 'xroi', 'xsq_test', 'xsurface', 'xvaredit',
'xvolume', 'xvolume_rotate', 'xvolume_write_image',
'xyouts', 'zoom', 'zoom_24']
"""Functions from: http://www.exelisvis.com/docs/routines-1.html"""
tokens = {
'root': [
(r'^\s*;.*?\n', Comment.Singleline),
(r'\b(' + '|'.join(_RESERVED) + r')\b', Keyword),
(r'\b(' + '|'.join(_BUILTIN_LIB) + r')\b', Name.Builtin),
(r'\+=|-=|\^=|\*=|/=|#=|##=|<=|>=|=', Operator),
(r'\+\+|--|->|\+|-|##|#|\*|/|<|>|&&|\^|~|\|\|\?|:', Operator),
(r'\b(mod=|lt=|le=|eq=|ne=|ge=|gt=|not=|and=|or=|xor=)', Operator),
(r'\b(mod|lt|le|eq|ne|ge|gt|not|and|or|xor)\b', Operator),
(r'\b[0-9](L|B|S|UL|ULL|LL)?\b', Number),
(r'.', Text),
]
}
class RdLexer(RegexLexer):
"""
Pygments Lexer for R documentation (Rd) files
This is a very minimal implementation, highlighting little more
than the macros. A description of Rd syntax is found in `Writing R
Extensions <http://cran.r-project.org/doc/manuals/R-exts.html>`_
and `Parsing Rd files <developer.r-project.org/parseRd.pdf>`_.
*New in Pygments 1.6.*
"""
name = 'Rd'
aliases = ['rd']
filenames = ['*.Rd']
mimetypes = ['text/x-r-doc']
# To account for verbatim / LaTeX-like / and R-like areas
# would require parsing.
tokens = {
'root' : [
# catch escaped brackets and percent sign
(r'\\[\\{}%]', String.Escape),
# comments
(r'%.*$', Comment),
# special macros with no arguments
(r'\\(?:cr|l?dots|R|tab)\b', Keyword.Constant),
# macros
(r'\\[a-zA-Z]+\b', Keyword),
# special preprocessor macros
(r'^\s*#(?:ifn?def|endif).*\b', Comment.Preproc),
# non-escaped brackets
(r'[{}]', Name.Builtin),
# everything else
(r'[^\\%\n{}]+', Text),
(r'.', Text),
]
}
class IgorLexer(RegexLexer):
"""
Pygments Lexer for Igor Pro procedure files (.ipf).
See http://www.wavemetrics.com/ and http://www.igorexchange.com/.
*New in Pygments 1.7.*
"""
name = 'Igor'
aliases = ['igor', 'igorpro']
filenames = ['*.ipf']
mimetypes = ['text/ipf']
flags = re.IGNORECASE
flowControl = [
'if', 'else', 'elseif', 'endif', 'for', 'endfor', 'strswitch', 'switch',
'case', 'endswitch', 'do', 'while', 'try', 'catch', 'endtry', 'break',
'continue', 'return',
]
types = [
'variable', 'string', 'constant', 'strconstant', 'NVAR', 'SVAR', 'WAVE',
'STRUCT', 'ThreadSafe', 'function', 'end', 'static', 'macro', 'window',
'graph', 'Structure', 'EndStructure', 'EndMacro', 'FuncFit', 'Proc',
'Picture', 'Menu', 'SubMenu', 'Prompt', 'DoPrompt',
]
operations = [
'Abort', 'AddFIFOData', 'AddFIFOVectData', 'AddMovieAudio',
'AddMovieFrame', 'APMath', 'Append', 'AppendImage',
'AppendLayoutObject', 'AppendMatrixContour', 'AppendText',
'AppendToGraph', 'AppendToLayout', 'AppendToTable', 'AppendXYZContour',
'AutoPositionWindow', 'BackgroundInfo', 'Beep', 'BoundingBall',
'BrowseURL', 'BuildMenu', 'Button', 'cd', 'Chart', 'CheckBox',
'CheckDisplayed', 'ChooseColor', 'Close', 'CloseMovie', 'CloseProc',
'ColorScale', 'ColorTab2Wave', 'Concatenate', 'ControlBar',
'ControlInfo', 'ControlUpdate', 'ConvexHull', 'Convolve', 'CopyFile',
'CopyFolder', 'CopyScales', 'Correlate', 'CreateAliasShortcut', 'Cross',
'CtrlBackground', 'CtrlFIFO', 'CtrlNamedBackground', 'Cursor',
'CurveFit', 'CustomControl', 'CWT', 'Debugger', 'DebuggerOptions',
'DefaultFont', 'DefaultGuiControls', 'DefaultGuiFont', 'DefineGuide',
'DelayUpdate', 'DeleteFile', 'DeleteFolder', 'DeletePoints',
'Differentiate', 'dir', 'Display', 'DisplayHelpTopic',
'DisplayProcedure', 'DoAlert', 'DoIgorMenu', 'DoUpdate', 'DoWindow',
'DoXOPIdle', 'DrawAction', 'DrawArc', 'DrawBezier', 'DrawLine',
'DrawOval', 'DrawPICT', 'DrawPoly', 'DrawRect', 'DrawRRect', 'DrawText',
'DSPDetrend', 'DSPPeriodogram', 'Duplicate', 'DuplicateDataFolder',
'DWT', 'EdgeStats', 'Edit', 'ErrorBars', 'Execute', 'ExecuteScriptText',
'ExperimentModified', 'Extract', 'FastGaussTransform', 'FastOp',
'FBinRead', 'FBinWrite', 'FFT', 'FIFO2Wave', 'FIFOStatus', 'FilterFIR',
'FilterIIR', 'FindLevel', 'FindLevels', 'FindPeak', 'FindPointsInPoly',
'FindRoots', 'FindSequence', 'FindValue', 'FPClustering', 'fprintf',
'FReadLine', 'FSetPos', 'FStatus', 'FTPDelete', 'FTPDownload',
'FTPUpload', 'FuncFit', 'FuncFitMD', 'GetAxis', 'GetFileFolderInfo',
'GetLastUserMenuInfo', 'GetMarquee', 'GetSelection', 'GetWindow',
'GraphNormal', 'GraphWaveDraw', 'GraphWaveEdit', 'Grep', 'GroupBox',
'Hanning', 'HideIgorMenus', 'HideInfo', 'HideProcedures', 'HideTools',
'HilbertTransform', 'Histogram', 'IFFT', 'ImageAnalyzeParticles',
'ImageBlend', 'ImageBoundaryToMask', 'ImageEdgeDetection',
'ImageFileInfo', 'ImageFilter', 'ImageFocus', 'ImageGenerateROIMask',
'ImageHistModification', 'ImageHistogram', 'ImageInterpolate',
'ImageLineProfile', 'ImageLoad', 'ImageMorphology', 'ImageRegistration',
'ImageRemoveBackground', 'ImageRestore', 'ImageRotate', 'ImageSave',
'ImageSeedFill', 'ImageSnake', 'ImageStats', 'ImageThreshold',
'ImageTransform', 'ImageUnwrapPhase', 'ImageWindow', 'IndexSort',
'InsertPoints', 'Integrate', 'IntegrateODE', 'Interp3DPath',
'Interpolate3D', 'KillBackground', 'KillControl', 'KillDataFolder',
'KillFIFO', 'KillFreeAxis', 'KillPath', 'KillPICTs', 'KillStrings',
'KillVariables', 'KillWaves', 'KillWindow', 'KMeans', 'Label', 'Layout',
'Legend', 'LinearFeedbackShiftRegister', 'ListBox', 'LoadData',
'LoadPackagePreferences', 'LoadPICT', 'LoadWave', 'Loess',
'LombPeriodogram', 'Make', 'MakeIndex', 'MarkPerfTestTime',
'MatrixConvolve', 'MatrixCorr', 'MatrixEigenV', 'MatrixFilter',
'MatrixGaussJ', 'MatrixInverse', 'MatrixLinearSolve',
'MatrixLinearSolveTD', 'MatrixLLS', 'MatrixLUBkSub', 'MatrixLUD',
'MatrixMultiply', 'MatrixOP', 'MatrixSchur', 'MatrixSolve',
'MatrixSVBkSub', 'MatrixSVD', 'MatrixTranspose', 'MeasureStyledText',
'Modify', 'ModifyContour', 'ModifyControl', 'ModifyControlList',
'ModifyFreeAxis', 'ModifyGraph', 'ModifyImage', 'ModifyLayout',
'ModifyPanel', 'ModifyTable', 'ModifyWaterfall', 'MoveDataFolder',
'MoveFile', 'MoveFolder', 'MoveString', 'MoveSubwindow', 'MoveVariable',
'MoveWave', 'MoveWindow', 'NeuralNetworkRun', 'NeuralNetworkTrain',
'NewDataFolder', 'NewFIFO', 'NewFIFOChan', 'NewFreeAxis', 'NewImage',
'NewLayout', 'NewMovie', 'NewNotebook', 'NewPanel', 'NewPath',
'NewWaterfall', 'Note', 'Notebook', 'NotebookAction', 'Open',
'OpenNotebook', 'Optimize', 'ParseOperationTemplate', 'PathInfo',
'PauseForUser', 'PauseUpdate', 'PCA', 'PlayMovie', 'PlayMovieAction',
'PlaySnd', 'PlaySound', 'PopupContextualMenu', 'PopupMenu',
'Preferences', 'PrimeFactors', 'Print', 'printf', 'PrintGraphs',
'PrintLayout', 'PrintNotebook', 'PrintSettings', 'PrintTable',
'Project', 'PulseStats', 'PutScrapText', 'pwd', 'Quit',
'RatioFromNumber', 'Redimension', 'Remove', 'RemoveContour',
'RemoveFromGraph', 'RemoveFromLayout', 'RemoveFromTable', 'RemoveImage',
'RemoveLayoutObjects', 'RemovePath', 'Rename', 'RenameDataFolder',
'RenamePath', 'RenamePICT', 'RenameWindow', 'ReorderImages',
'ReorderTraces', 'ReplaceText', 'ReplaceWave', 'Resample',
'ResumeUpdate', 'Reverse', 'Rotate', 'Save', 'SaveData',
'SaveExperiment', 'SaveGraphCopy', 'SaveNotebook',
'SavePackagePreferences', 'SavePICT', 'SaveTableCopy',
'SetActiveSubwindow', 'SetAxis', 'SetBackground', 'SetDashPattern',
'SetDataFolder', 'SetDimLabel', 'SetDrawEnv', 'SetDrawLayer',
'SetFileFolderInfo', 'SetFormula', 'SetIgorHook', 'SetIgorMenuMode',
'SetIgorOption', 'SetMarquee', 'SetProcessSleep', 'SetRandomSeed',
'SetScale', 'SetVariable', 'SetWaveLock', 'SetWindow', 'ShowIgorMenus',
'ShowInfo', 'ShowTools', 'Silent', 'Sleep', 'Slider', 'Smooth',
'SmoothCustom', 'Sort', 'SoundInRecord', 'SoundInSet',
'SoundInStartChart', 'SoundInStatus', 'SoundInStopChart',
'SphericalInterpolate', 'SphericalTriangulate', 'SplitString',
'sprintf', 'sscanf', 'Stack', 'StackWindows',
'StatsAngularDistanceTest', 'StatsANOVA1Test', 'StatsANOVA2NRTest',
'StatsANOVA2RMTest', 'StatsANOVA2Test', 'StatsChiTest',
'StatsCircularCorrelationTest', 'StatsCircularMeans',
'StatsCircularMoments', 'StatsCircularTwoSampleTest',
'StatsCochranTest', 'StatsContingencyTable', 'StatsDIPTest',
'StatsDunnettTest', 'StatsFriedmanTest', 'StatsFTest',
'StatsHodgesAjneTest', 'StatsJBTest', 'StatsKendallTauTest',
'StatsKSTest', 'StatsKWTest', 'StatsLinearCorrelationTest',
'StatsLinearRegression', 'StatsMultiCorrelationTest',
'StatsNPMCTest', 'StatsNPNominalSRTest', 'StatsQuantiles',
'StatsRankCorrelationTest', 'StatsResample', 'StatsSample',
'StatsScheffeTest', 'StatsSignTest', 'StatsSRTest', 'StatsTTest',
'StatsTukeyTest', 'StatsVariancesTest', 'StatsWatsonUSquaredTest',
'StatsWatsonWilliamsTest', 'StatsWheelerWatsonTest',
'StatsWilcoxonRankTest', 'StatsWRCorrelationTest', 'String',
'StructGet', 'StructPut', 'TabControl', 'Tag', 'TextBox', 'Tile',
'TileWindows', 'TitleBox', 'ToCommandLine', 'ToolsGrid',
'Triangulate3d', 'Unwrap', 'ValDisplay', 'Variable', 'WaveMeanStdv',
'WaveStats', 'WaveTransform', 'wfprintf', 'WignerTransform',
'WindowFunction',
]
functions = [
'abs', 'acos', 'acosh', 'AiryA', 'AiryAD', 'AiryB', 'AiryBD', 'alog',
'area', 'areaXY', 'asin', 'asinh', 'atan', 'atan2', 'atanh',
'AxisValFromPixel', 'Besseli', 'Besselj', 'Besselk', 'Bessely', 'bessi',
'bessj', 'bessk', 'bessy', 'beta', 'betai', 'BinarySearch',
'BinarySearchInterp', 'binomial', 'binomialln', 'binomialNoise', 'cabs',
'CaptureHistoryStart', 'ceil', 'cequal', 'char2num', 'chebyshev',
'chebyshevU', 'CheckName', 'cmplx', 'cmpstr', 'conj', 'ContourZ', 'cos',
'cosh', 'cot', 'CountObjects', 'CountObjectsDFR', 'cpowi',
'CreationDate', 'csc', 'DataFolderExists', 'DataFolderRefsEqual',
'DataFolderRefStatus', 'date2secs', 'datetime', 'DateToJulian',
'Dawson', 'DDEExecute', 'DDEInitiate', 'DDEPokeString', 'DDEPokeWave',
'DDERequestWave', 'DDEStatus', 'DDETerminate', 'deltax', 'digamma',
'DimDelta', 'DimOffset', 'DimSize', 'ei', 'enoise', 'equalWaves', 'erf',
'erfc', 'exists', 'exp', 'expInt', 'expNoise', 'factorial', 'fakedata',
'faverage', 'faverageXY', 'FindDimLabel', 'FindListItem', 'floor',
'FontSizeHeight', 'FontSizeStringWidth', 'FresnelCos', 'FresnelSin',
'gamma', 'gammaInc', 'gammaNoise', 'gammln', 'gammp', 'gammq', 'Gauss',
'Gauss1D', 'Gauss2D', 'gcd', 'GetDefaultFontSize',
'GetDefaultFontStyle', 'GetKeyState', 'GetRTError', 'gnoise',
'GrepString', 'hcsr', 'hermite', 'hermiteGauss', 'HyperG0F1',
'HyperG1F1', 'HyperG2F1', 'HyperGNoise', 'HyperGPFQ', 'IgorVersion',
'ilim', 'imag', 'Inf', 'Integrate1D', 'interp', 'Interp2D', 'Interp3D',
'inverseERF', 'inverseERFC', 'ItemsInList', 'jlim', 'Laguerre',
'LaguerreA', 'LaguerreGauss', 'leftx', 'LegendreA', 'limit', 'ln',
'log', 'logNormalNoise', 'lorentzianNoise', 'magsqr', 'MandelbrotPoint',
'MarcumQ', 'MatrixDet', 'MatrixDot', 'MatrixRank', 'MatrixTrace', 'max',
'mean', 'min', 'mod', 'ModDate', 'NaN', 'norm', 'NumberByKey',
'numpnts', 'numtype', 'NumVarOrDefault', 'NVAR_Exists', 'p2rect',
'ParamIsDefault', 'pcsr', 'Pi', 'PixelFromAxisVal', 'pnt2x',
'poissonNoise', 'poly', 'poly2D', 'PolygonArea', 'qcsr', 'r2polar',
'real', 'rightx', 'round', 'sawtooth', 'ScreenResolution', 'sec',
'SelectNumber', 'sign', 'sin', 'sinc', 'sinh', 'SphericalBessJ',
'SphericalBessJD', 'SphericalBessY', 'SphericalBessYD',
'SphericalHarmonics', 'sqrt', 'StartMSTimer', 'StatsBetaCDF',
'StatsBetaPDF', 'StatsBinomialCDF', 'StatsBinomialPDF',
'StatsCauchyCDF', 'StatsCauchyPDF', 'StatsChiCDF', 'StatsChiPDF',
'StatsCMSSDCDF', 'StatsCorrelation', 'StatsDExpCDF', 'StatsDExpPDF',
'StatsErlangCDF', 'StatsErlangPDF', 'StatsErrorPDF', 'StatsEValueCDF',
'StatsEValuePDF', 'StatsExpCDF', 'StatsExpPDF', 'StatsFCDF',
'StatsFPDF', 'StatsFriedmanCDF', 'StatsGammaCDF', 'StatsGammaPDF',
'StatsGeometricCDF', 'StatsGeometricPDF', 'StatsHyperGCDF',
'StatsHyperGPDF', 'StatsInvBetaCDF', 'StatsInvBinomialCDF',
'StatsInvCauchyCDF', 'StatsInvChiCDF', 'StatsInvCMSSDCDF',
'StatsInvDExpCDF', 'StatsInvEValueCDF', 'StatsInvExpCDF',
'StatsInvFCDF', 'StatsInvFriedmanCDF', 'StatsInvGammaCDF',
'StatsInvGeometricCDF', 'StatsInvKuiperCDF', 'StatsInvLogisticCDF',
'StatsInvLogNormalCDF', 'StatsInvMaxwellCDF', 'StatsInvMooreCDF',
'StatsInvNBinomialCDF', 'StatsInvNCChiCDF', 'StatsInvNCFCDF',
'StatsInvNormalCDF', 'StatsInvParetoCDF', 'StatsInvPoissonCDF',
'StatsInvPowerCDF', 'StatsInvQCDF', 'StatsInvQpCDF',
'StatsInvRayleighCDF', 'StatsInvRectangularCDF', 'StatsInvSpearmanCDF',
'StatsInvStudentCDF', 'StatsInvTopDownCDF', 'StatsInvTriangularCDF',
'StatsInvUsquaredCDF', 'StatsInvVonMisesCDF', 'StatsInvWeibullCDF',
'StatsKuiperCDF', 'StatsLogisticCDF', 'StatsLogisticPDF',
'StatsLogNormalCDF', 'StatsLogNormalPDF', 'StatsMaxwellCDF',
'StatsMaxwellPDF', 'StatsMedian', 'StatsMooreCDF', 'StatsNBinomialCDF',
'StatsNBinomialPDF', 'StatsNCChiCDF', 'StatsNCChiPDF', 'StatsNCFCDF',
'StatsNCFPDF', 'StatsNCTCDF', 'StatsNCTPDF', 'StatsNormalCDF',
'StatsNormalPDF', 'StatsParetoCDF', 'StatsParetoPDF', 'StatsPermute',
'StatsPoissonCDF', 'StatsPoissonPDF', 'StatsPowerCDF',
'StatsPowerNoise', 'StatsPowerPDF', 'StatsQCDF', 'StatsQpCDF',
'StatsRayleighCDF', 'StatsRayleighPDF', 'StatsRectangularCDF',
'StatsRectangularPDF', 'StatsRunsCDF', 'StatsSpearmanRhoCDF',
'StatsStudentCDF', 'StatsStudentPDF', 'StatsTopDownCDF',
'StatsTriangularCDF', 'StatsTriangularPDF', 'StatsTrimmedMean',
'StatsUSquaredCDF', 'StatsVonMisesCDF', 'StatsVonMisesNoise',
'StatsVonMisesPDF', 'StatsWaldCDF', 'StatsWaldPDF', 'StatsWeibullCDF',
'StatsWeibullPDF', 'StopMSTimer', 'str2num', 'stringCRC', 'stringmatch',
'strlen', 'strsearch', 'StudentA', 'StudentT', 'sum', 'SVAR_Exists',
'TagVal', 'tan', 'tanh', 'ThreadGroupCreate', 'ThreadGroupRelease',
'ThreadGroupWait', 'ThreadProcessorCount', 'ThreadReturnValue', 'ticks',
'trunc', 'Variance', 'vcsr', 'WaveCRC', 'WaveDims', 'WaveExists',
'WaveMax', 'WaveMin', 'WaveRefsEqual', 'WaveType', 'WhichListItem',
'WinType', 'WNoise', 'x', 'x2pnt', 'xcsr', 'y', 'z', 'zcsr', 'ZernikeR',
]
functions += [
'AddListItem', 'AnnotationInfo', 'AnnotationList', 'AxisInfo',
'AxisList', 'CaptureHistory', 'ChildWindowList', 'CleanupName',
'ContourInfo', 'ContourNameList', 'ControlNameList', 'CsrInfo',
'CsrWave', 'CsrXWave', 'CTabList', 'DataFolderDir', 'date',
'DDERequestString', 'FontList', 'FuncRefInfo', 'FunctionInfo',
'FunctionList', 'FunctionPath', 'GetDataFolder', 'GetDefaultFont',
'GetDimLabel', 'GetErrMessage', 'GetFormula',
'GetIndependentModuleName', 'GetIndexedObjName', 'GetIndexedObjNameDFR',
'GetRTErrMessage', 'GetRTStackInfo', 'GetScrapText', 'GetUserData',
'GetWavesDataFolder', 'GrepList', 'GuideInfo', 'GuideNameList', 'Hash',
'IgorInfo', 'ImageInfo', 'ImageNameList', 'IndexedDir', 'IndexedFile',
'JulianToDate', 'LayoutInfo', 'ListMatch', 'LowerStr', 'MacroList',
'NameOfWave', 'note', 'num2char', 'num2istr', 'num2str',
'OperationList', 'PadString', 'ParseFilePath', 'PathList', 'PICTInfo',
'PICTList', 'PossiblyQuoteName', 'ProcedureText', 'RemoveByKey',
'RemoveEnding', 'RemoveFromList', 'RemoveListItem',
'ReplaceNumberByKey', 'ReplaceString', 'ReplaceStringByKey',
'Secs2Date', 'Secs2Time', 'SelectString', 'SortList',
'SpecialCharacterInfo', 'SpecialCharacterList', 'SpecialDirPath',
'StringByKey', 'StringFromList', 'StringList', 'StrVarOrDefault',
'TableInfo', 'TextFile', 'ThreadGroupGetDF', 'time', 'TraceFromPixel',
'TraceInfo', 'TraceNameList', 'UniqueName', 'UnPadString', 'UpperStr',
'VariableList', 'WaveInfo', 'WaveList', 'WaveName', 'WaveUnits',
'WinList', 'WinName', 'WinRecreation', 'XWaveName',
'ContourNameToWaveRef', 'CsrWaveRef', 'CsrXWaveRef',
'ImageNameToWaveRef', 'NewFreeWave', 'TagWaveRef', 'TraceNameToWaveRef',
'WaveRefIndexed', 'XWaveRefFromTrace', 'GetDataFolderDFR',
'GetWavesDataFolderDFR', 'NewFreeDataFolder', 'ThreadGroupGetDFR',
]
tokens = {
'root': [
(r'//.*$', Comment.Single),
(r'"([^"\\]|\\.)*"', String),
# Flow Control.
(r'\b(%s)\b' % '|'.join(flowControl), Keyword),
# Types.
(r'\b(%s)\b' % '|'.join(types), Keyword.Type),
# Built-in operations.
(r'\b(%s)\b' % '|'.join(operations), Name.Class),
# Built-in functions.
(r'\b(%s)\b' % '|'.join(functions), Name.Function),
# Compiler directives.
(r'^#(include|pragma|define|ifdef|ifndef|endif)',
Name.Decorator),
(r'[^a-zA-Z"/]+', Text),
(r'.', Text),
],
}
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