From 9c52cae24529b0733dbc245b79c4d9eb8f8e94fc Mon Sep 17 00:00:00 2001
From: Aly Cerruti <me@s5.pm>
Date: Fri, 15 Oct 2021 11:43:34 -0700
Subject: [PATCH] Add node for Newick Format

---
 molecular-evolutionary-genetics-analysis.md |  4 +
 newick-format.md                            | 97 +++++++++++++++++++++
 2 files changed, 101 insertions(+)
 create mode 100644 newick-format.md

diff --git a/molecular-evolutionary-genetics-analysis.md b/molecular-evolutionary-genetics-analysis.md
index df3b964..14ddff9 100644
--- a/molecular-evolutionary-genetics-analysis.md
+++ b/molecular-evolutionary-genetics-analysis.md
@@ -11,3 +11,7 @@
     - [[Newick Format]]
     - [[CSV]]
 - Does alignment via [[nucleotides]] 
+
+[//begin]: # "Autogenerated link references for markdown compatibility"
+[Newick Format]: newick-format "Newick Format"
+[//end]: # "Autogenerated link references"
diff --git a/newick-format.md b/newick-format.md
new file mode 100644
index 0000000..69c285c
--- /dev/null
+++ b/newick-format.md
@@ -0,0 +1,97 @@
+# Newick Format
+
+- Format to represent trees with distances and branch names
+
+# Examples
+
+Printed using DendroPY options
+`show_internal_node_labels = True`, `width=40`, `plot_metric="length"`.
+
+## Single Descendant
+
+```
+(B)A;
+```
+```
+A------------------------------------- B
+```
+
+## Two Descendants
+
+```
+(B,C)A;
+```
+```
+/------------------------------------- B
+A
+\------------------------------------- C
+```
+
+## Two Levels Of Descendants
+
+```
+((D,E)B,(F,G)C)A;
+```
+```
+                   /------------------ D
+/------------------B
+|                  \------------------ E
+A
+|                  /------------------ F
+\------------------C
+                   \------------------ G
+```
+
+## Distances
+
+```
+(A:1,B:2);
+```
+```
+/------------------ A
+@
+\------------------------------------- B
+```
+
+## Big Example
+
+```
+(
+    (
+        (
+            (
+                Dasyatis_laosensis:0.00864712,
+                Hemitrygon_akajei:0.02501331
+            ):0.00555551,
+            Dasyatis_sp._TT:0.01190329
+        ):0.07844344,
+        Maculabatis_gerrardi:0.10443933
+    ):0.03362855,
+    (
+        Aetobatus_flagellum:0.06712780,
+        (
+            Aetobatus_narinari:0.00190402,
+            Aetobatus_ocellatus:0.00159879
+        ):0.05608476
+    ):0.06364667,
+    Squatina_squatina:0.24404039
+);
+```
+
+```
+         /Dasyatis laosensis
+        /@
+  /-----@\- Hemitrygon akajei
+  |     |
+/-@     \ Dasyatis sp. TT
+| |
+| \------- Maculabatis gerrardi
+|
+|   /----- Aetobatus flagellum
+@---@
+|   |    /Aetobatus narinari
+|   \----@
+|        \Aetobatus ocellatus
+|
+\------------------ Squatina squatina
+```