Earthnuker/ED_LRR
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WIP 2, to be cleaned and merged

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This commit is contained in:
Daniel S. 2020-02-06 00:24:24 +01:00
parent d1e3152a83
commit aec570d055
15 changed files with 1826 additions and 1181 deletions
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1
.gitignore vendored
View file

@ -22,3 +22,4 @@ exe/
installer/Output/ installer/Output/
workspace.code-workspace workspace.code-workspace
ed_lrr_gui/web/jobs.db ed_lrr_gui/web/jobs.db
ed_lrr_gui/web/ed_lrr_web_ui.db

1
MANIFEST.in
View file

@ -1,3 +1,4 @@
include rust/Cargo.toml include rust/Cargo.toml
include rust/.cargo/config include rust/.cargo/config
recursive-include rust/src * recursive-include rust/src *
recursive-include ed_lrr_gui *

13
README.md
View file

@ -52,13 +52,11 @@ pip install .
then you can run `ed_lrr -h` from your command prompt to get help then you can run `ed_lrr -h` from your command prompt to get help
# To do # TODO
## Router ## Routing
- Caching wrapper for System - Custom weights and filtering for routing
- Only fetch position once when building Spatial-Tree
- Fetch data on demand
## GUI ## GUI
@ -79,4 +77,7 @@ then you can run `ed_lrr -h` from your command prompt to get help
## Misc ## Misc
- Luigi based Task queue for distributed routing - Luigi based Task queue for distributed routing
- Full route tree computation
- overlap elimination

12
benchmark_out.py Normal file
View file

@ -0,0 +1,12 @@
import ujson as json
from datetime import timedelta
data=json.load(open("benchmark.json"))
times=[]
for workers,results in data.items():
t_total=sum([res['time'] for res in results])/len(results)
avg_len=sum([res['ret'] for res in results])/len(results)
times.append([int(workers),timedelta(seconds=t_total),avg_len])
for k,v,l in sorted(times,key=lambda rec:rec[1]):
print(k,v,l)

6
build_gui.py
View file

@ -1,5 +1,4 @@
import subprocess as SP from PyQt5 import uic
from glob import glob
import os import os
@ -13,4 +12,5 @@ for root, folders, files in os.walk(ui_path):
if ext == ".ui": if ext == ".ui":
outfile = outfile + ".py" outfile = outfile + ".py"
print(file, "->", outfile) print(file, "->", outfile)
SP.check_call(["pyuic5", "--from-imports", "-o", outfile, file]) with open(outfile, "w") as fh_out:
uic.compileUi(file, fh_out, from_imports=True)

3
pytest.ini
View file

@ -1,2 +1,3 @@
[pytest] [pytest]
qt_api=pyqt5 qt_api=pyqt5
addopts = --cov=ed_lrr_gui --cov-report html

2
rust/.cargo/config
View file

@ -1,2 +0,0 @@
[build]
rustflags = ["-C", "target-cpu=native"]

482
rust/Cargo.lock generated
View file

@ -1,11 +1,29 @@
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# It is not intended for manual editing. # It is not intended for manual editing.
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@ -36,7 +87,7 @@ dependencies = [
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@ -44,13 +95,13 @@ dependencies = [
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name = "bstr" name = "bstr"
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@ -89,7 +211,7 @@ version = "0.1.12"
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@ -102,27 +224,38 @@ dependencies = [
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31
rust/Cargo.toml
View file

@ -1,26 +1,37 @@
[package] [package]
name = "ed_lrr" name = "ed_lrr"
version = "0.0.0" version = "0.2.0"
authors = ["Daniel Seiller <earthnuker@gmail.com>"] authors = ["Daniel Seiller <earthnuker@gmail.com>"]
edition = "2018" edition = "2018"
repository = "https://gitlab.com/Earthnuker/ed_lrr.git" repository = "https://gitlab.com/Earthnuker/ed_lrr.git"
license = "WTFPL" license = "WTFPL"
[lib] [lib]
crate-type = ["cdylib"] crate-type = ["cdylib"]
name = "_ed_lrr" name = "_ed_lrr"
[[bin]]
name = "galaxy_test"
path = "src/galaxy.rs"
[profile.release]
codegen-units = 1
lto = true
[dependencies] [dependencies]
pyo3 = { version = "0.8.0", features = ["extension-module"] } pyo3 = { version = "0.8.5", features = ["extension-module"] }
csv = "1.1.1" csv = "1.1.3"
serde = { version = "1.0.101", features = ["derive"] } serde = { version = "1.0.104", features = ["derive"] }
humantime = "1.3.0" humantime = "2.0.0"
permutohedron = "0.2.4" permutohedron = "0.2.4"
serde_json = "1.0.40" serde_json = "1.0.45"
fnv = "1.0.6" fnv = "1.0.6"
bincode = "1.2.0" bincode = "1.2.1"
sha3 = "0.8.2" sha3 = "0.8.2"
byteorder = "1.3.2" byteorder = "1.3.2"
strsim = "0.9.2" strsim = "0.9.3"
rstar = "0.5.1" rstar = "0.7.1"
crossbeam-channel = "0.4.0"
simd-json = "0.2.3"
better-panic = "0.2.0"

81
rust/src/common.rs
View file

@ -1,5 +1,60 @@
use crate::route::Router;
use serde::{Deserialize, Serialize}; use serde::{Deserialize, Serialize};
use std::cmp::Ordering; use std::cmp::Ordering;
use std::collections::HashMap;
use std::path::PathBuf;
pub fn find_matches(
path: &PathBuf,
names: Vec<String>,
exact: bool
) -> Result<HashMap<String, (f64, Option<System>)>, String> {
let mut best: HashMap<String, (f64, Option<System>)> = HashMap::new();
for name in &names {
best.insert(name.to_string(), (0.0, None));
}
let mut reader = match csv::ReaderBuilder::new().from_path(path) {
Ok(rdr) => rdr,
Err(e) => {
return Err(format!("Error opening {}: {}", path.to_str().unwrap(), e).to_string());
}
};
let systems = reader.deserialize::<SystemSerde>();
for sys in systems {
let sys = sys.unwrap();
for name in &names {
best.entry(name.clone()).and_modify(|ent| {
if (exact)&&(&sys.system==name) {
*ent = (1.0, Some(sys.clone().build()))
} else {
let d1 = strsim::normalized_levenshtein(&sys.system, &name);
let d2 = strsim::normalized_levenshtein(&sys.body, &name);
if d1 > ent.0 {
*ent = (d1, Some(sys.clone().build()))
} else if d2 > ent.0 {
*ent = (d2, Some(sys.clone().build()))
}
}
});
}
}
Ok(best)
}
#[derive(Debug, Clone,Copy, Serialize, Deserialize)]
pub struct TreeNode {
pub id: u32,
pub pos: [f32; 3],
pub mult: f32,
}
impl TreeNode {
pub fn get(&self,router:&Router) -> Option<System> {
let mut cache = router.cache.as_ref().unwrap().lock().unwrap();
cache.get(self.id)
}
}
#[derive(Debug, Clone, Serialize, Deserialize)] #[derive(Debug, Clone, Serialize, Deserialize)]
pub struct SystemSerde { pub struct SystemSerde {
@ -15,17 +70,25 @@ pub struct SystemSerde {
} }
impl SystemSerde { impl SystemSerde {
pub fn build(&self) -> System { pub fn build(self) -> System {
System { System {
id: self.id, id: self.id,
star_type: self.star_type.clone(), star_type: self.star_type,
system: self.system.clone(), system: self.system,
body: self.body.clone(), body: self.body,
mult: self.mult, mult: self.mult,
distance: self.distance, distance: self.distance,
pos: [self.x, self.y, self.z], pos: [self.x, self.y, self.z],
} }
} }
pub fn to_node(&self) -> TreeNode {
TreeNode {
id: self.id,
pos: [self.x, self.y, self.z],
mult: self.mult,
}
}
} }
#[derive(Debug, Clone, Deserialize, Serialize)] #[derive(Debug, Clone, Deserialize, Serialize)]
@ -39,6 +102,16 @@ pub struct System {
pub pos: [f32; 3], pub pos: [f32; 3],
} }
impl System {
pub fn to_node(&self) -> TreeNode {
TreeNode {
id: self.id,
pos: self.pos,
mult: self.mult,
}
}
}
impl Ord for System { impl Ord for System {
fn cmp(&self, other: &Self) -> Ordering { fn cmp(&self, other: &Self) -> Ordering {
self.id.cmp(&other.id) self.id.cmp(&other.id)

103
rust/src/lib.rs
View file

@ -1,45 +1,58 @@
extern crate strsim; #![deny(warnings)]
mod common; mod common;
mod preprocess; mod preprocess;
mod route; mod route;
use common::{System, SystemSerde}; use std::path::PathBuf;
use common::find_matches;
use pyo3::exceptions::*; use pyo3::exceptions::*;
use pyo3::prelude::*; use pyo3::prelude::*;
use pyo3::types::{PyDict, PyList}; use pyo3::types::{PyDict, PyList};
use std::collections::HashMap;
use std::path::PathBuf;
fn find_matches( enum SysEntry {
path: &PathBuf, ID(u32),
names: Vec<String>, Name(String),
) -> Result<HashMap<String, (f64, Option<System>)>, String> { }
let mut best: HashMap<String, (f64, Option<System>)> = HashMap::new();
for name in &names { impl From<&str> for SysEntry {
best.insert(name.to_string(), (0.0, None)); fn from(s: &str) -> SysEntry {
if let Ok(n) = s.parse() {
SysEntry::ID(n)
} else {
SysEntry::Name(s.to_owned())
}
} }
let mut reader = match csv::ReaderBuilder::new().from_path(path) { }
Ok(rdr) => rdr,
Err(e) => { fn resolve(entries: &Vec<SysEntry>, path: &PathBuf) -> Result<Vec<u32>,String> {
return Err(format!("Error opening {}: {}", path.to_str().unwrap(), e).to_string()); let mut names: Vec<String> = Vec::new();
let mut ids: Vec<u32> = Vec::new();
let mut ret: Vec<u32> = Vec::new();
for ent in entries {
match ent {
SysEntry::Name(name) => names.push(name.to_owned()),
SysEntry::ID(id) => ids.push(*id),
} }
}; };
let systems = reader.deserialize::<SystemSerde>(); let name_ids = find_matches(path, names, false)?;
for sys in systems { for ent in entries {
let sys = sys.unwrap(); match ent {
for name in &names { SysEntry::Name(name) => {
best.entry(name.clone()).and_modify(|ent| { let ent_res=name_ids.get(&name.to_owned()).ok_or(format!("System {} not found",name))?;
let d1 = strsim::normalized_levenshtein(&sys.system, &name); let sys=ent_res.1.as_ref().ok_or(format!("System {} not found",name))?;
if d1 > ent.0 { if ent_res.0<0.75 {
*ent = (d1, Some(sys.build())) println!("WARNING: {} match to {} with low confidence ({}%)",name,sys.system,ent_res.0*100.0);
} }
}); ret.push(sys.id);
}
SysEntry::ID(id) => ret.push(*id),
} }
} }
Ok(best) return Ok(ret);
} }
#[pymodule] #[pymodule]
pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> { pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
better_panic::install();
/// preprocess(infile_systems, infile_bodies, outfile, callback) /// preprocess(infile_systems, infile_bodies, outfile, callback)
/// -- /// --
/// ///
@ -75,14 +88,14 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
Ok(state.to_object(py)) Ok(state.to_object(py))
} }
///find_sys(sys_names,sys_list) ///find_sys(sys_names, sys_list_path)
/// -- /// --
/// ///
/// Find system by name /// Find system by name
#[pyfn(m, "find_sys")] #[pyfn(m, "find_sys")]
fn find_sys(py: Python, sys_names: Vec<String>, sys_list: String) -> PyResult<PyObject> { fn find_sys(py: Python, sys_names: Vec<String>, sys_list: String) -> PyResult<PyObject> {
let path = PathBuf::from(sys_list); let path = PathBuf::from(sys_list);
match find_matches(&path, sys_names) { match find_matches(&path, sys_names,false) {
Ok(vals) => { Ok(vals) => {
let ret = PyDict::new(py); let ret = PyDict::new(py);
for (key, (diff, sys)) in vals { for (key, (diff, sys)) in vals {
@ -104,15 +117,15 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
} }
} }
/// route(infile, hops, range, radius_mult, mode,primary, greedyness, precomp, callback) /// route(hops, range, prune, mode, primary, permute, keep_first, keep_last, greedyness, precomp, path, num_workers, callback)
/// -- /// --
/// ///
/// Compute a Route using the suplied parameters /// Compute a Route using the suplied parameters
#[pyfn(m, "route")] #[pyfn(m, "route")]
#[allow(clippy::too_many_arguments)] #[allow(clippy::too_many_arguments)]
fn route( fn py_route(
py: Python<'static>, py: Python<'static>,
hops: Vec<String>, hops: Vec<&str>,
range: f32, range: f32,
prune: Option<(usize, f32)>, prune: Option<(usize, f32)>,
mode: String, mode: String,
@ -123,9 +136,11 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
greedyness: Option<f32>, greedyness: Option<f32>,
precomp: Option<String>, precomp: Option<String>,
path: String, path: String,
num_workers: Option<usize>,
callback: PyObject, callback: PyObject,
) -> PyResult<PyObject> { ) -> PyResult<PyObject> {
use route::*; use route::*;
let num_workers=num_workers.unwrap_or(1);
let mode = match Mode::parse(&mode) { let mode = match Mode::parse(&mode) {
Ok(val) => val, Ok(val) => val,
Err(e) => { Err(e) => {
@ -133,7 +148,12 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
} }
}; };
let state_dict = PyDict::new(py); let state_dict = PyDict::new(py);
callback.call(py, (state_dict,), None).unwrap(); {
let cb_res = callback.call(py, (state_dict,), None);
if cb_res.is_err() {
println!("Error: {:?}",cb_res);
}
}
let callback_wrapped = move |state: &SearchState| { let callback_wrapped = move |state: &SearchState| {
state_dict.set_item("mode", state.mode.clone())?; state_dict.set_item("mode", state.mode.clone())?;
state_dict.set_item("system", state.system.clone())?; state_dict.set_item("system", state.system.clone())?;
@ -147,14 +167,22 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
state_dict.set_item("prc_seen", state.prc_seen)?; state_dict.set_item("prc_seen", state.prc_seen)?;
state_dict.set_item("from", state.from.clone())?; state_dict.set_item("from", state.from.clone())?;
state_dict.set_item("to", state.to.clone())?; state_dict.set_item("to", state.to.clone())?;
callback.call(py, (state_dict,), None) let cb_res=callback.call(py, (state_dict,), None);
if cb_res.is_err() {
println!("Error: {:?}",cb_res);
}
cb_res
};
let hops: Vec<SysEntry> = hops.iter().cloned().map(SysEntry::from).collect();
println!("Resolving systems...");
let hops: Vec<u32> = match resolve(&hops,&PathBuf::from(&path)) {
Ok(ids) => ids,
Err(err_msg) => {
return Err(PyErr::new::<ValueError, _>(err_msg));
}
}; };
let mut systems = Vec::new();
for sys in hops {
systems.push(route::SysEntry::parse(&sys))
}
let opts = RouteOpts { let opts = RouteOpts {
systems, systems: hops,
range: Some(range), range: Some(range),
file_path: PathBuf::from(path), file_path: PathBuf::from(path),
precomp_file: precomp.map(PathBuf::from), precomp_file: precomp.map(PathBuf::from),
@ -167,6 +195,7 @@ pub fn _ed_lrr(_py: Python, m: &PyModule) -> PyResult<()> {
keep_last, keep_last,
primary, primary,
prune, prune,
workers: num_workers
}; };
let none = ().to_object(py); let none = ().to_object(py);
match route(opts) { match route(opts) {

1
rust/src/preprocess.rs
View file

@ -36,7 +36,6 @@ struct System {
id64: i64, id64: i64,
name: String, name: String,
coords: Coords, coords: Coords,
date: String,
} }
#[derive(Debug)] #[derive(Debug)]

2220
rust/src/route.rs
View file

File diff suppressed because it is too large Load diff

19
setup.py
View file

@ -7,7 +7,6 @@ from setuptools_rust import Binding, RustExtension, Strip
with open("README.md", "r") as fh: with open("README.md", "r") as fh:
long_description = fh.read() long_description = fh.read()
setup( setup(
name="ed_lrr_gui", name="ed_lrr_gui",
version_format="{tag}.dev{commitcount}+{gitsha}", version_format="{tag}.dev{commitcount}+{gitsha}",
@ -22,6 +21,7 @@ setup(
"_ed_lrr", "_ed_lrr",
path="rust/Cargo.toml", path="rust/Cargo.toml",
binding=Binding.PyO3, binding=Binding.PyO3,
rustc_flags=["--emit=asm"],
strip=Strip.No, strip=Strip.No,
debug=False, debug=False,
native=True, native=True,
@ -40,6 +40,7 @@ setup(
"PyQt5", "PyQt5",
"click-default-group", "click-default-group",
"profig", "profig",
"ujson",
"colorama", "colorama",
"svgwrite", "svgwrite",
], ],
@ -47,19 +48,25 @@ setup(
"setuptools", "setuptools",
"setuptools-rust", "setuptools-rust",
"wheel", "wheel",
"pyinstaller",
"pytest-runner", "pytest-runner",
"setuptools-git-version", "setuptools-git-version",
], ],
tests_require=["pytest", "pytest-pep8", "pytest-cov"],
extras_require={ extras_require={
"dev": ["black", "pyinstaller", "jinja2", "tsp"], "test": ["pytest", "pytest-cov", "pytest-dependency"],
"dev": ["black", "jinja2", "tsp"],
"web": [ "web": [
"flask", "flask",
"sqlalchemy", "gevent",
"webargs", "webargs",
"flask-executor",
"flask-wtf",
"flask-user",
"flask-debugtoolbar",
"flask-bootstrap4",
"flask-sqlalchemy", "flask-sqlalchemy",
"sqlalchemy-utils", "flask-nav",
"flask-admin",
"sqlalchemy_utils[password]",
], ],
}, },
classifiers=[ classifiers=[

32
tox.ini
View file

@ -1,18 +1,22 @@
[tox] [tox]
envlist = py35,py36,py37 envlist = py35-build,py36-build,py37-build,py38-build
requires = tox-conda requires =
tox-conda
[testenv] [testenv]
platform = win32
description = Build ED_LRR description = Build ED_LRR
recreate = True recreate = True
skip_install = True skip_install = True
skipsdist = True skipsdist = True
deps = deps =
PyQt5 PyQt5
setuptools_rust setuptools_rust
build: https://github.com/Nuitka/Nuitka/archive/develop.zip
conda_deps = conda_deps =
pycrypto pycrypto
nuitka ujson
dev: ipython
passenv = passenv =
CARGO_HOME CARGO_HOME
RUSTUP_HOME RUSTUP_HOME
@ -24,11 +28,23 @@ whitelist_externals =
cargo cargo
iscc iscc
cmd cmd
powershell
conda
conda_channels = conda_channels =
conda-forge conda-forge
commands = commands =
python build_gui.py python build_gui.py
pip install .
python -m nuitka --plugin-enable=multiprocessing --remove-output --plugin-enable=qt-plugins --standalone --assume-yes-for-downloads --follow-imports --output-dir=exe ed_lrr_gui\__main__.py build: python -m pip install .[web]
cmd /c rename exe\__main__.dist\__main__.exe ED_LRR.exe build: python -m nuitka --remove-output --plugin-enable=multiprocessing --plugin-enable=qt-plugins --plugin-enable=gevent --standalone --assume-yes-for-downloads --follow-imports --output-dir=exe ed_lrr_gui\__main__.py
iscc /F"ED_LRR_{envname}" /Qp installer/ED_LRR.iss build: cmd /c rename exe\__main__.dist\__main__.exe ED_LRR.exe
build: iscc /F"ED_LRR_{envname}" /Qp installer/ED_LRR.iss
install: python -m pip install -e .[dev,web,test]
dev: python -m pip install -e .[dev,web,test]
dev: cmd /c echo install done now run "conda activate {envdir}"
test: python -m pip install .[dev,web,test]
test: cargo test
test: pytest