diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/BytecodeViewer.java b/src/main/java/the/bytecode/club/bytecodeviewer/BytecodeViewer.java
index 83e5159b..d82b1ad8 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/BytecodeViewer.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/BytecodeViewer.java
@@ -398,6 +398,21 @@ public class BytecodeViewer
         return a;
     }
 
+    /**
+     * Called any time refresh is called to automatically compile all of the compilable panes that're opened.
+     */
+    public static boolean autoCompileSuccessful()
+    {
+        if(!BytecodeViewer.viewer.autoCompileOnRefresh.isSelected())
+            return true;
+        
+        try {
+            return compile(true);
+        } catch (NullPointerException ignored) {
+            return false;
+        }
+    }
+
     /**
      * Compile all of the compilable panes that're opened.
      *
@@ -682,7 +697,7 @@ public class BytecodeViewer
 
             Thread resourceExport = new Thread(() ->
             {
-                if (viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+                if (BytecodeViewer.autoCompileSuccessful())
                     return;
                 
                 JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/gui/resourceviewer/WorkPaneRefresh.java b/src/main/java/the/bytecode/club/bytecodeviewer/gui/resourceviewer/WorkPaneRefresh.java
index 947a8fbf..2b1fb53b 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/gui/resourceviewer/WorkPaneRefresh.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/gui/resourceviewer/WorkPaneRefresh.java
@@ -23,11 +23,8 @@ public class WorkPaneRefresh implements Runnable
 	@Override
 	public void run()
 	{
-		if (BytecodeViewer.viewer.autoCompileOnRefresh.isSelected())
-			try {
-				if (!BytecodeViewer.compile(false))
-					return;
-			} catch (NullPointerException ignored) { }
+		if (!BytecodeViewer.autoCompileSuccessful())
+			return;
 		
 		JButton src = null;
 		if(event != null && event.getSource() instanceof JButton)
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginManager.java b/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginManager.java
index 84320394..e4c0a21b 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginManager.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginManager.java
@@ -1,9 +1,7 @@
 package the.bytecode.club.bytecodeviewer.plugin;
 
 import java.io.File;
-import java.util.HashMap;
-import java.util.Map;
-import java.util.Set;
+import java.util.*;
 import javax.swing.filechooser.FileFilter;
 import the.bytecode.club.bytecodeviewer.BytecodeViewer;
 import the.bytecode.club.bytecodeviewer.api.Plugin;
@@ -41,7 +39,7 @@ public final class PluginManager {
 
     private static final Map<String, PluginLaunchStrategy> launchStrategies = new HashMap<>();
     private static final PluginFileFilter filter = new PluginFileFilter();
-    private static Plugin pluginInstance;
+    private static List<Plugin> pluginInstances = new ArrayList<>();
 
     static
     {
@@ -67,14 +65,16 @@ public final class PluginManager {
      *
      * @param newPluginInstance the new plugin instance
      */
-    public static void runPlugin(Plugin newPluginInstance) {
-        if (pluginInstance == null || pluginInstance.isFinished()) {
-            pluginInstance = newPluginInstance;
-            pluginInstance.start(); // start the thread
-        } else if (!pluginInstance.isFinished()) {
-            BytecodeViewer.showMessage("There is currently another plugin running right now, please wait for that to "
-                    + "finish executing.");
-        }
+    public static void runPlugin(Plugin newPluginInstance)
+    {
+        //clean the plugin list from dead threads
+        pluginInstances.removeIf(Plugin::isFinished);
+        
+        //add to the list of running instances
+        pluginInstances.add(newPluginInstance);
+        
+        //start the plugin thread
+        newPluginInstance.start();
     }
 
     /**
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginWriter.java b/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginWriter.java
index 9990ca00..40447473 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginWriter.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/plugin/PluginWriter.java
@@ -126,7 +126,7 @@ public class PluginWriter extends JFrame
 	{
 		Thread exportThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			if(savePath == null)
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/resources/ResourceDecompiling.java b/src/main/java/the/bytecode/club/bytecodeviewer/resources/ResourceDecompiling.java
index 6fcef0fa..628f169d 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/resources/ResourceDecompiling.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/resources/ResourceDecompiling.java
@@ -8,13 +8,11 @@ import the.bytecode.club.bytecodeviewer.Configuration;
 import the.bytecode.club.bytecodeviewer.api.ExceptionUI;
 import the.bytecode.club.bytecodeviewer.decompilers.Decompiler;
 import the.bytecode.club.bytecodeviewer.gui.components.FileChooser;
-import the.bytecode.club.bytecodeviewer.gui.components.MultipleChoiceDialogue;
 import the.bytecode.club.bytecodeviewer.util.DialogueUtils;
 import the.bytecode.club.bytecodeviewer.util.JarUtils;
 import the.bytecode.club.bytecodeviewer.util.MiscUtils;
 
 import javax.swing.*;
-import javax.swing.filechooser.FileFilter;
 import java.io.File;
 import java.util.Objects;
 
@@ -37,7 +35,7 @@ public class ResourceDecompiling
 		
 		Thread decompileThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),
@@ -189,7 +187,7 @@ public class ResourceDecompiling
 		}
 		
 		Thread decompileThread = new Thread(() -> {
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			final String s = BytecodeViewer.viewer.workPane.getCurrentViewer().cn.name;
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/APKExport.java b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/APKExport.java
index eff5e0c6..d29bc3f4 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/APKExport.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/APKExport.java
@@ -67,7 +67,7 @@ public class APKExport implements Exporter
 		
 		Thread exportThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/DexExport.java b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/DexExport.java
index d0466fe6..500eaacd 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/DexExport.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/DexExport.java
@@ -3,7 +3,6 @@ package the.bytecode.club.bytecodeviewer.resources.exporting.impl;
 import the.bytecode.club.bytecodeviewer.BytecodeViewer;
 import the.bytecode.club.bytecodeviewer.Configuration;
 import the.bytecode.club.bytecodeviewer.gui.components.FileChooser;
-import the.bytecode.club.bytecodeviewer.gui.components.MultipleChoiceDialogue;
 import the.bytecode.club.bytecodeviewer.resources.exporting.Exporter;
 import the.bytecode.club.bytecodeviewer.util.Dex2Jar;
 import the.bytecode.club.bytecodeviewer.util.DialogueUtils;
@@ -34,7 +33,7 @@ public class DexExport implements Exporter
 		
 		Thread exportThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/RunnableJarExporter.java b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/RunnableJarExporter.java
index a799e420..b3c3b79c 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/RunnableJarExporter.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/RunnableJarExporter.java
@@ -4,7 +4,6 @@ import the.bytecode.club.bytecodeviewer.BytecodeViewer;
 import the.bytecode.club.bytecodeviewer.Configuration;
 import the.bytecode.club.bytecodeviewer.gui.components.ExportJar;
 import the.bytecode.club.bytecodeviewer.gui.components.FileChooser;
-import the.bytecode.club.bytecodeviewer.gui.components.MultipleChoiceDialogue;
 import the.bytecode.club.bytecodeviewer.resources.exporting.Exporter;
 import the.bytecode.club.bytecodeviewer.util.DialogueUtils;
 
@@ -28,7 +27,7 @@ public class RunnableJarExporter implements Exporter
 		
 		Thread exportThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),
diff --git a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/ZipExport.java b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/ZipExport.java
index 271367ca..9397a4e4 100644
--- a/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/ZipExport.java
+++ b/src/main/java/the/bytecode/club/bytecodeviewer/resources/exporting/impl/ZipExport.java
@@ -3,7 +3,6 @@ package the.bytecode.club.bytecodeviewer.resources.exporting.impl;
 import the.bytecode.club.bytecodeviewer.BytecodeViewer;
 import the.bytecode.club.bytecodeviewer.Configuration;
 import the.bytecode.club.bytecodeviewer.gui.components.FileChooser;
-import the.bytecode.club.bytecodeviewer.gui.components.MultipleChoiceDialogue;
 import the.bytecode.club.bytecodeviewer.resources.exporting.Exporter;
 import the.bytecode.club.bytecodeviewer.util.DialogueUtils;
 import the.bytecode.club.bytecodeviewer.util.JarUtils;
@@ -28,7 +27,7 @@ public class ZipExport implements Exporter
 		
 		Thread exportThread = new Thread(() ->
 		{
-			if (BytecodeViewer.viewer.compileOnSave.isSelected() && !BytecodeViewer.compile(false))
+			if (BytecodeViewer.autoCompileSuccessful())
 				return;
 			
 			JFileChooser fc = new FileChooser(Configuration.getLastDirectory(),